Pairwise Alignments

Query, 390 a.a., Flagellin protein flaA from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (490), Expect = 5e-54
 Identities = 109/192 (56%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 3   TINTNVMSMTAQRNLGTTSSSLATSMQRLSSGLRVNSAKDDAAGLAISERMNAQVRGLSV 62
           T+NTNV S+ AQ+NL T++S LATSM+RLSSGLR+NSAKDDAAGLAIS R+N+QVRGL V
Sbjct: 4   TVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLEV 63

Query: 63  AARNANDGISLAQTAEGALGKVGDMLQRMRELAVQSANASNNSSDRTALQAEVTQLRSEI 122
             RNAND IS+AQ AEGA+ +  +MLQRMR+L VQS N +N+S+D +AL+AE+ QL +EI
Sbjct: 64  GMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLANEI 123

Query: 123 DRVAKTTSFNGTKLLDGTF-ANATFQVGANAGEGIAIDSIVSANSTALGQLSATEHFVAA 181
           D + KTT+F  TKLL G F A   FQVGA  GE I + ++ ++N ++L   S      AA
Sbjct: 124 DEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKV-TVKASNKSSLSVGSLGNTTSAA 182

Query: 182 VAAPSTAANAAI 193
            A+     +AAI
Sbjct: 183 RASSLKKIDAAI 194



 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 24/200 (12%)

Query: 210 VALGGIGASTTAAQR----TTQVVDAINAKSADTGVFARETGAGAYEIFSSRDLTAATDF 265
           +A G +   T   QR    T Q  +  N+ SAD      E    A EI    ++   T F
Sbjct: 77  IAEGAMQEQTNMLQRMRDLTVQSENGANS-SADLSALKAEMDQLANEI---DEIGKTTAF 132

Query: 266 GAAFTAAATGAPGDTAPPGT-----------LTTLSAINVNSFGDAQKA-----LQVIDK 309
           G     A   + G     G             +  S+++V S G+   A     L+ ID 
Sbjct: 133 GTTKLLAGGFSAGKNFQVGAQDGEDIKVTVKASNKSSLSVGSLGNTTSAARASSLKKIDA 192

Query: 310 AINSINSSRADLGALQSRFENAVANIQITGENISAARGRIVDADFAKETSNLSRAQILQQ 369
           AI +I++ RADLGA+Q+R  + ++N   T  N++ A+ RIVD DFAKETS +++ Q+LQQ
Sbjct: 193 AIKTIDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSQMTKNQVLQQ 252

Query: 370 AGTAMVAQANQAQQGVLSLL 389
            G+AM+AQANQ  Q  LSLL
Sbjct: 253 TGSAMLAQANQLPQVALSLL 272