Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 787 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  551 bits (1420), Expect = e-161
 Identities = 317/701 (45%), Positives = 440/701 (62%), Gaps = 52/701 (7%)

Query: 38  ARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALN 97
           AR P   ++PVTLNFV A+I+AV R ++  TG+  +VDPRVKG + LV+E  V    A +
Sbjct: 90  ARTPLG-DQPVTLNFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYD 148

Query: 98  QFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHES 157
              A LR+QGFS+VD GG+ ++VPEADAKL G  + +      PA N ++T+ FRL +E+
Sbjct: 149 MLLAALRMQGFSVVDVGGVAQVVPEADAKLLGGPIYSADK---PAGNGMLTRTFRLQYEN 205

Query: 158 ANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIPLQ 217
           A NL+PVLRP++ PNN IN  PGNN++V+TDYA+NL R+ ++I  +D   A D +++P+ 
Sbjct: 206 AVNLIPVLRPIVSPNNPINAYPGNNTIVVTDYAENLSRVAQLIEGIDTPSAIDTDVVPIH 265

Query: 218 HAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLVA 277
           + +A D+A +V+ L++  T GG   DQ+ K  ++ +PRSNS+++RA +P R  L R+L+ 
Sbjct: 266 NGIAVDIAQMVSDLLE--TQGG---DQTQKINVIGDPRSNSIIIRAGSPERTELARNLIY 320

Query: 278 RLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSG------------------G 319
           +LD   ++    N+HVVYL+NA A  LA  LR  L GES G                  G
Sbjct: 321 KLDNAQNNP--SNLHVVYLRNAQAGKLAQALRGLLTGESEGESSDNSRSVLSGMGASTNG 378

Query: 320 LSGSGGLGGSSATSPLNRAALTPTGTASANNN--PSTAAVAASASPSTGG-QIQADPATN 376
            SG G  G  ++ +    A+ +  G    +N   P++     + + S GG  IQAD  TN
Sbjct: 379 QSGQGSSGDGTSGTTSGNASTSGNGYGQGSNGTTPASTKNEQNTAFSAGGVTIQADATTN 438

Query: 377 SLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQ-GALGSSGDR 435
           +L+I+AP+P YR LR VID LD RRAQV +ESLI EV  + A+EFG+QWQ G LG SG  
Sbjct: 439 TLLISAPDPLYRNLREVIDLLDQRRAQVVIESLIVEVGEDDASEFGVQWQTGNLGGSG-- 496

Query: 436 VIGLLGTNFGTGGRNILELAQGNATPSPGMNLGLARRTNGVYVLG------FLARFLQEN 489
           VIG  G N G    N+      +  P  G+NLG+   T  +  +G       LAR L+  
Sbjct: 497 VIG--GVNLGGTALNLNGKTSIDVLPQ-GLNLGVVNGTVDIPGIGKILDLKVLARALKSK 553

Query: 490 GEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLT 549
           G  NVLSTPNLLTLDNE A I +GQ +PFV+G +   G G +N   NPFQT+ R++VGL 
Sbjct: 554 GGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSN---NPFQTVTREEVGLK 610

Query: 550 LRVKPQISENGTIKMTIYQEVSNVVPSSVNSTTGLITNKRTIESTVLVEDGAVVVLGGLL 609
           L V+PQISE GT+K+ IYQEVS+V  +  +STTG++TNKR I++++L++DG ++VLGGLL
Sbjct: 611 LNVRPQISEGGTVKLDIYQEVSSV-DNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLL 669

Query: 610 QDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYE 669
           QD Y+ + + VP L  +P  G LFR+E R   KTNLMVFLRP ++RD      + L+RY+
Sbjct: 670 QDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYIIRDTAAGRGITLNRYD 729

Query: 670 LMRSVQKDAQPRQSSVLGVNEAPVMPPQLPPRAPSPDGTAP 710
            MR  Q   QP +S  +   +A    PQLP  A +  GTAP
Sbjct: 730 FMRRAQGLLQPDRSWAMPDMQA----PQLPASARAIPGTAP 766