Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 632 a.a., type II secretion system protein GspD from Pseudomonas fluorescens FW300-N2E3

 Score =  322 bits (824), Expect = 5e-92
 Identities = 219/675 (32%), Positives = 349/675 (51%), Gaps = 73/675 (10%)

Query: 15  HGGALTALALVLCLLSGDGISQTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVV 74
           +G  L AL + + LL G  +++  R   A N         AE+  +   M++I    V++
Sbjct: 10  YGALLRALGIAVLLLPGWVVAEEQRWQLAMNN--------AELRDIVAEMSSILDTTVIL 61

Query: 75  DPRVKGTVNLVTERPVTPTAALNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGNVVSA 134
           DPRV+G + +++ + +        F +VL    F+++D G    I P A+A+ +    S 
Sbjct: 62  DPRVQGRITVMSGQALDREGVRRLFYSVLDAHNFTVIDQGDRILITPVAEARTRA---SQ 118

Query: 135 GSVSALPASNTVVTQIFRLNHESANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQ 194
           G           VT++  L   SA +L  ++RPL+  N  +  +   N+LV+TD A N++
Sbjct: 119 GDPRT-SRDGQFVTEVIALGASSAADLAGLVRPLVSTNGYVGPSVSANALVVTDTASNVR 177

Query: 195 RIGRIIASLDVAGATDVEIIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEP 254
           RIG+++  LD        I+ L+H +AAD+A ++   +  S   GA+A     + ++A+P
Sbjct: 178 RIGQVVRQLDSGTKNAHTIVTLRHGLAADIAKVMEASLGKS---GAEAG----SLVIADP 230

Query: 255 RSNSLVLRAANPARLALVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAG 314
           R+N LV+   + AR  LVR L   LD P++ KL  N  V+ L ++DA  LA  L A    
Sbjct: 231 RANRLVVVGPSVARERLVR-LAGSLDIPATTKLD-NARVIRLHHSDAKQLAEVLDAL--- 285

Query: 315 ESSGGLSGSGGLGGSSATSPLNRAALTPTGTASANNNPSTAAVAASASPSTGGQIQADPA 374
                  G G    SS+       A TP                          ++AD  
Sbjct: 286 -------GQGFKPQSSSPGSKEPMAATPV------------------------MVKADER 314

Query: 375 TNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGD 434
            N+L+I A   Q R L  ++ +LD  RAQV + + I E++ +     G+QW   L S G 
Sbjct: 315 QNALVIFADPAQLRTLENIVRELDQPRAQVLIHAAIVEISGDIVEALGVQW--GLDSGGA 372

Query: 435 R-VIGLLGTNFGT-GGRNILELAQGNATPSPGMNLGLARRTNGVYVLGFLARFLQENGEG 492
           + +I   GT     GG N  +        +P     L R   G +  G L   L  N   
Sbjct: 373 KGIINFPGTGVPVLGGFNFDD-------KNPAPEGSLLRLGGGNF--GALISALASNSRS 423

Query: 493 NVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRV 552
           N+LSTP+LLTLDN+EA+I++GQNVPF TG +    SG +N    PF T+ERKDVG++L++
Sbjct: 424 NLLSTPSLLTLDNQEAEIIVGQNVPFKTGSYATNSSGADN----PFTTVERKDVGISLKI 479

Query: 553 KPQISENGTIKMTIYQEVSNVVPS-SVNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQD 611
           +P I+E   +++ + QE+S++ PS S   ++ LITNKR ++ST+L  DG ++V+GGL++D
Sbjct: 480 RPHINEGSILRLEVEQEISDIAPSVSGVDSSDLITNKRALKSTILANDGEIIVIGGLIKD 539

Query: 612 EYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYELM 671
                +  VP L  +P  G LFR    ++ K+NLMVFLRP ++R  ++ + ++ DRY+ +
Sbjct: 540 SVRTQESGVPVLRSIPYLGALFRWTKDTQTKSNLMVFLRPTIVRTRQDIAEISEDRYKAL 599

Query: 672 RSVQKDAQPRQSSVL 686
           R + +    +  S+L
Sbjct: 600 RDLSQPTARQNHSLL 614