Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 718 a.a., type II and III secretion system protein:NolW-like protein:NolW-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  141 bits (355), Expect = 1e-37
 Identities = 170/664 (25%), Positives = 283/664 (42%), Gaps = 99/664 (14%)

Query: 53  VAAEIEAVARTMATITGRNVVV---DPRVKGTVNLVTERPVTPTAALNQFAAVLRLQGFS 109
           V +++   +R + T   R+VVV     R +  +NL T  P +                 S
Sbjct: 87  VTSQLATKSRDLGTGNARSVVVVQAQDRTRVIINLTTLSPYS-----------------S 129

Query: 110 LVDTGGLYKIVPE----ADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESANNLVPVL 165
            VD   L+ ++ +    A A      + A  V+  P +            ++  N V   
Sbjct: 130 RVDGNNLFVVIGQGAGAAQASQPTTAMGAQRVAVPPPTPASAKPFIPAGVKAIRN-VDFQ 188

Query: 166 RPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEI------IPLQHA 219
           R  +G  N + ++  N S+   D  +   +I    A   +     V +       P+Q  
Sbjct: 189 RGELGEGNVV-IDLSNPSIA-PDIQEQGGKIRVDFAKTQLPEPLRVRLDVKDFATPVQFV 246

Query: 220 VAADMAALVTRLIDPSTAGGAQADQSY-KTTLVAEPRSNS-LVLRAANPA-----RLAL- 271
            A+      + LI+PS A    A Q+  K T+   P +N  L  RAA+       +L+L 
Sbjct: 247 SASATGDKASILIEPSGAFDYSAFQTENKLTISVRPLTNEDLDRRAADKPVYTGEKLSLN 306

Query: 272 -----VRSLV------ARLDQPSSDKLSGNIH--------------VVYLKNADAASLAT 306
                VRS++        L+  +SD + G I               V+  K  D   +  
Sbjct: 307 FQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQALDLVLKTKGLDKRKVGN 366

Query: 307 TLRAALAGE-SSGGLSGSGGLGGSSATSPLNRAALTPTGTASANNNPSTAAVAASASPST 365
            L  A A E ++        L   +  +PL R  L      +A+      +V ++ S + 
Sbjct: 367 VLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAESKAD 426

Query: 366 G-GQIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQ 424
             G I  D  TN++I    + +  +LR ++ QLD    QV +E+ I E N +   + G++
Sbjct: 427 ERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVEANVDYNKQLGVR 486

Query: 425 WQGALGSSGDRVIGLLGT-NFGTGGRNILELAQGNATPS-PGMNLGLARRTNGVYVLGFL 482
           W G+  +SG       G  N G    N      GN TP+ P ++LG A  T+G+  LGF+
Sbjct: 487 WGGSTNTSGSGKWTTYGLDNNGDEAGN----TSGNLTPNVPFVDLGAAGATSGIG-LGFV 541

Query: 483 AR---------FLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNG 533
                       +++ G G ++S P ++T D E AKI+ G  +P+      ++ SG    
Sbjct: 542 TNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE----SSSSGAT-- 595

Query: 534 SVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNSTTGLITNKRT-IE 592
                 T+  K+  L+L V PQI+ +  I M +  +V+   P  +N+  G+   K+  + 
Sbjct: 596 ------TVSFKEASLSLEVTPQITPDNRIIMEV--KVTKDEPDYLNAVLGVPPIKKNEVN 647

Query: 593 STVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPV 652
           + VL+ DG  +V+GG+  +  +   +KVP LGDVP  G LFR +  S  K+ L+VFL P 
Sbjct: 648 AKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPR 707

Query: 653 VMRD 656
           +M +
Sbjct: 708 IMNN 711



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 36  QTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAA 95
           + A  P    E ++LNF   ++ +V + +A  T  N+V    V+G + L  +  V    A
Sbjct: 291 RAADKPVYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN-VPWDQA 349

Query: 96  LNQFAAVLRLQGFSLVDTGGLYKIVP--EADAKLQGNVVSAGSVSALPASNTVVTQIFRL 153
           L+    VL+ +G      G +  + P  E  A+ +  + S   ++ L     +  ++ ++
Sbjct: 350 LD---LVLKTKGLDKRKVGNVLLVAPADEIAARERQELESLKQIAELA---PLRRELLQV 403

Query: 154 NHESANNLVPVLRPLIGPNN------TINVNPGNNSLVITDYADNLQRIGRIIASLDV 205
           N+  A ++  + + +    +      +I V+   N+++     + L  + RI++ LD+
Sbjct: 404 NYAKAADIAKLFQSVTSAESKADERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDI 461