Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  303 bits (777), Expect = 2e-86
 Identities = 224/704 (31%), Positives = 350/704 (49%), Gaps = 87/704 (12%)

Query: 24  LVLCLLSGDGISQTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVN 83
           L+  L++G  +   A A +A+NE +  +F  AEI+    T+     + ++VDP ++G +N
Sbjct: 10  LIASLVAGTVLLSPAIAWSASNEQLAPSFKNAEIQEFINTVGKRLNKTIIVDPTIRGKIN 69

Query: 84  LVTERPVTPTAALNQFAAVLRLQGFSLVDT-GGLYKIVPEADAKLQGNVVSAGSVSALPA 142
           + +   +T       F  VL++ G+++V+   G+ K++ + DAK     V+  S   L  
Sbjct: 70  VRSYDNLTEDQYFQFFLNVLQVYGYAVVEMENGVLKVIKDKDAKTSNIRVADDSAPGL-- 127

Query: 143 SNTVVTQIFRLNHESANNLVPVLRPL---IGPNNTINVNPGNNSLVITDYADNLQRIGRI 199
            + +VT+I  L +  A  L P+LR L    G  N +N +P +N L++T  A  + ++  I
Sbjct: 128 GDELVTRIVPLYNSEAKQLAPLLRQLNDNAGGGNVVNYDP-SNVLMLTGRAAVVNKLVEI 186

Query: 200 IASLDVAGATDVEIIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSL 259
           +  +D  G T+V ++PLQHA A++M  ++  L   S        Q+ K  +VA+ R N++
Sbjct: 187 VKRVDKQGDTEVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQAPK--VVADERINAV 244

Query: 260 VLRAANPARLALVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGG 319
           V+     +R  +V  LV RLD   +   +GN  V YL+ A A  L   L           
Sbjct: 245 VISGDEKSRQRVVE-LVKRLDAEQAS--TGNTKVRYLRYAKAEDLVEVL----------- 290

Query: 320 LSGSGGLGGSSATSPLNRAALTPTGTASA-NNNPSTAAVAASASPSTGGQIQADPATNSL 378
                                  TG A     +    A  AS    +   I A   TN+L
Sbjct: 291 -----------------------TGFAQKLEESKDNGAQQASGKRRSQINIMAHTDTNAL 327

Query: 379 IITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIG 438
           +I+A   Q R L +VI+QLD RRAQV VE++I EV       FG+QW  A  S G     
Sbjct: 328 VISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQW--ATESGGGTQFN 385

Query: 439 LLGTNFGTGGRNILELA----------QGNATPSPGMNLG-------LAR---RTNGVYV 478
            LG   G  G  I +             GN  P    N         LA+   + NG+  
Sbjct: 386 NLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAW 445

Query: 479 ------LGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNN 532
                  G L + +  +   NVL+TP++ TLDN+EA  ++G  VP +TG         +N
Sbjct: 446 GVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTG-----AQNSSN 500

Query: 533 GSVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNSTTGLITN--KRT 590
           G+ NPFQT+ERK+VG+ L+V PQI+E   +K+ I QEVS +     N  TG+      R 
Sbjct: 501 GNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGI-----NGKTGVDVTFATRR 555

Query: 591 IESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLR 650
           + +TV+ + G +VVLGGL+ +E   + +KVP LGD+P+ G+LF+S +  +KK NLMVF++
Sbjct: 556 LTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIK 615

Query: 651 PVVMRDGRETSSLALDRYELMRSVQKDAQPRQSSVLGVNEAPVM 694
           P ++RDG     +A  +Y   R++Q + Q R  +++     PV+
Sbjct: 616 PTIIRDGITMEGIAGRKYNYFRALQLEQQERGVNLMPNTSVPVL 659