Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 552 a.a., type II and III secretion system protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  129 bits (325), Expect = 3e-34
 Identities = 108/364 (29%), Positives = 174/364 (47%), Gaps = 60/364 (16%)

Query: 367 GQIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQ 426
           G +  D  TNSLII A E   ++L  ++  LD  RAQ+ +++ I E   E A E GIQW 
Sbjct: 219 GSVVVDTFTNSLIIQAVEDDQKKLMTLVSNLDKPRAQIQLKAHIVEATKETARELGIQWG 278

Query: 427 GALGSSGDRVIGLLGTNF------GTGGRNILELAQGNATP---SPGMN----------- 466
           G      +RV  + G+N       GTGG        G+ TP   +PG++           
Sbjct: 279 GV-----NRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSYTPIFGAPGISGQGNGINFPID 333

Query: 467 ---------LGLARRTNGVYVLGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVP 517
                    LGL   T G  +L      LQE+ + N+LS+P++ TLDN+ A    G+ VP
Sbjct: 334 TTGKSGAGSLGLMFGTIGGNMLEMQLSALQESSKINILSSPSISTLDNQMAYTENGEKVP 393

Query: 518 FVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSS 577
           +V+     T + G+       + ++ +D  L L + P + ++  +K+ +  +   V  + 
Sbjct: 394 YVS-----TNAQGD-------REVKFEDAVLRLEITPHVIDDKNLKLKVLVKKDEVDLTR 441

Query: 578 VNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSET 637
                  I  K+T E+T++V+DG  +V+ GL +D  +  +  VPGL DV   G LF S++
Sbjct: 442 TVEGNPFIIKKQT-ETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEGLGWLFGSDS 500

Query: 638 RSRKKTNLMVFLRPVVMRDGRETSSLALDRYELMRSVQKDAQPRQSSVLGVNEAPVMPPQ 697
           ++ K   +++F+ P V+   RE +       E   + Q   QP Q     + +AP +  Q
Sbjct: 501 KASKLEEVLIFITPAVL-PYREMA-------EQGATQQITVQPGQ-----LGQAPTVDQQ 547

Query: 698 LPPR 701
           L PR
Sbjct: 548 LLPR 551



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 15/180 (8%)

Query: 36  QTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAA 95
           Q  +A    + PVTL     ++    R++A   G+N+++ P VKG+VN+   R   P + 
Sbjct: 75  QVEQARPLPSVPVTLKLHNVDVGVALRSLAAAAGKNIILSPGVKGSVNVNVNR--VPWS- 131

Query: 96  LNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQ---GNVVSAGSVSALPASNT--VVTQI 150
            + F  +L   G      G L K++  AD K++     + +      L       +VT +
Sbjct: 132 -DVFKGMLDSNGLDYAWQGELIKVITMADKKVELEHATLENQRMAQKLKGRKVGPMVTTV 190

Query: 151 FRLNHESANNLVPVLRPLIG------PNNTINVNPGNNSLVITDYADNLQRIGRIIASLD 204
             + +  A  L   L   +       P  ++ V+   NSL+I    D+ +++  ++++LD
Sbjct: 191 LDVRYAEAAELKKNLEGFLSKDDGGKPVGSVVVDTFTNSLIIQAVEDDQKKLMTLVSNLD 250