Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  279 bits (714), Expect = 3e-79
 Identities = 204/680 (30%), Positives = 330/680 (48%), Gaps = 85/680 (12%)

Query: 45  NEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFAAVLR 104
           +E    NF   +I+     +     + ++VDP ++G +N+ +   +        F  VL+
Sbjct: 28  SEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQFFLNVLQ 87

Query: 105 LQGFSLVD-TGGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESANNLVP 163
           + G+++V+    + K++ + DAK     V+  +   L   + +VT+I  L +  A  L P
Sbjct: 88  VYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGL--GDEMVTRIVALYNTEAKQLAP 145

Query: 164 VLRPL---IGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIPLQHAV 220
           +LR L    G  N +N +P +N L+++  A  + ++  I+  +D  G T V+++PL++A 
Sbjct: 146 LLRQLNDNAGGGNVVNYDP-SNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVVPLEYAS 204

Query: 221 AADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLVARLD 280
           A +M  ++  L   +TA  AQ        +VA+ R N++V+     +R  +V  L+ RLD
Sbjct: 205 AGEMVRIIDTLY-RATANQAQL-PGQAPKVVADERINAVVVSGDEKSRQRVV-ELIHRLD 261

Query: 281 QPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGGLSGSGGLGGSSATSPLNRAAL 340
              +   +GN  V YL+ A A  L   L                                
Sbjct: 262 AEQAS--TGNTKVRYLRYAKAEDLVEVL-------------------------------- 287

Query: 341 TPTGTASANNNPSTAAVAASASPSTGGQIQADPATNSLIITAPEPQYRQLRAVIDQLDSR 400
             TG A         +  A         I A   TN+L+I+A   Q R + +VI+QLD R
Sbjct: 288 --TGFAQKLEGEKDPSAQAGGKRRNEINIMAHTDTNALVISAEPDQMRTIESVINQLDIR 345

Query: 401 RAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGLLGTNFGTGGRNILELAQGNAT 460
           RAQV VE++I EV       FG+QW  A  + G      LG   G  G  I +      T
Sbjct: 346 RAQVLVEAIIVEVAEGDNVGFGVQW--AAKADGGTQFNNLGPTIGEIGAGIWQAQDKEGT 403

Query: 461 ----PSPGMNLGLARRTNGVYVL--------------------GFLARFLQENGEGNVLS 496
               PS G  +G    T G   L                    G L + +  +   NVL+
Sbjct: 404 YITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVSADTNSNVLA 463

Query: 497 TPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQI 556
           TP++ TLDN+EA  ++G  VP +TG   +T S  N+   NPFQT+ERK+VG+ L+V PQI
Sbjct: 464 TPSITTLDNQEASFIVGDEVPILTG---STASSNNS---NPFQTVERKEVGVKLKVVPQI 517

Query: 557 SENGTIKMTIYQEVSNVVPSSVNSTTGLITN--KRTIESTVLVEDGAVVVLGGLLQDEYA 614
           +E   +K+ I QEV     S VN  TG+  +   R + +TV+ + G +VVLGGL+ +E  
Sbjct: 518 NEGNAVKLAIEQEV-----SGVNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572

Query: 615 GNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYELMRSV 674
            + +KVP LGD+P+ G+LF+S +  + K NLM+F++P ++RDG     +A  +Y   R++
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRDGVTMEGIAGRKYNYFRAL 632

Query: 675 QKDAQPRQSSVLGVNEAPVM 694
           Q + Q R  +++   + P++
Sbjct: 633 QLEQQERGVNLMPNTQVPIL 652