Pairwise Alignments

Query, 382 a.a., Outer membrane stress sensor protease DegS from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 450 a.a., serine protease, HtrA/DegQ/DegS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  282 bits (721), Expect = 1e-80
 Identities = 160/355 (45%), Positives = 229/355 (64%), Gaps = 10/355 (2%)

Query: 34  ASIVPVFEAPSGAPVA-TVEGTG--SFRAAARTASAAVVSINTSKAPVNNPQSSDPWFRF 90
           A+ + +  A S A +  +VEG    S        + AVVS+  S   V+  +  D  FR+
Sbjct: 14  AATLTMMPAVSQAAIPQSVEGQSIPSLAPMLERTTPAVVSVAVSGTHVSKQRVPDV-FRY 72

Query: 91  FFGDQAPSQQQS-----GLGSGVIV-SPAGYVLTNNHVIEEADEIEVILNDGRKSVAQVI 144
           FFG  AP +Q       GLGSGVI+ +  GY++TNNHVI+ AD+I+V L+DGR+  A++I
Sbjct: 73  FFGPNAPQEQVQERPFRGLGSGVIIDADKGYIVTNNHVIDGADDIQVGLHDGREVKAKLI 132

Query: 145 GTDPETDLAILKINLTDLPVITLGNSDALEIGDQVLAIGNPFGVGQTVTSGIVSALGRTQ 204
           GTD E+D+A+L+I   +L  I   +SD L +GD  +AIGNPFG+GQTVTSGIVSALGR+ 
Sbjct: 133 GTDSESDIALLQIEAKNLVAIKTSDSDELRVGDFAVAIGNPFGLGQTVTSGIVSALGRSG 192

Query: 205 LGINTFENFIQTDAAINPGNSGGALVDVSGQLMGINTAIYSRSGGSMGIGFAIPTSTARS 264
           LGI   ENFIQTDAAIN GNSGGALV++ G+L+GINTAI + +GG++GIGFAIP +  ++
Sbjct: 193 LGIEMLENFIQTDAAINSGNSGGALVNLKGELIGINTAIVAPNGGNVGIGFAIPANMVKN 252

Query: 265 VMEAIVKDGQVTRGWIGVEPQDLSPELAENFGMQPGTGVIISGVLQNGPAAQAGIRPGDV 324
           ++  I + G+V RG +G+  +DL  +LA+ FG+    G  ++ V     A +AGI+ GD+
Sbjct: 253 LIAQIAEHGEVRRGVLGIAGRDLDSQLAQGFGLDTQHGGFVNEVSAGSAAEKAGIKAGDI 312

Query: 325 ITAVAGRPVNNVAQLLSAVANLTPGTPASLDVVRRDGKTKVEVTPGKRNLPRQQA 379
           I +V GR + +  +L + VA +  G    L ++R   K  V VT G+ N   ++A
Sbjct: 313 IVSVDGRAIKSFQELRAKVATMGAGAKVELGLIRDGDKKTVNVTLGEANQTTEKA 367



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 302 GVIISGVLQNGPAAQAGIRPGDVITAVAGRPVNNVAQL 339
           GV I+ V Q  PAA +G++ GD+I  +    V ++  L
Sbjct: 386 GVEITDVAQGSPAAMSGLQKGDLIVGINRTAVKDLKSL 423