Pairwise Alignments

Query, 273 a.a., Integral membrane protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 264 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  117 bits (293), Expect = 3e-31
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 1/256 (0%)

Query: 17  VVAGGVAGFLGGMIGAGGGLILIPVLYHSFAVLGVDADIRMHLVVGTALATVVPTSILGM 76
           +  G   GF+ G++G GGG+I +PVL     + GV  +   H+ + T+LA ++ T     
Sbjct: 9   IALGAFIGFMAGLLGIGGGVIAVPVLLFLLPMAGVVPEHLTHVAIATSLAAIILTGASSA 68

Query: 77  RVHWQRGNVDTGIVKRLAPPVLLGAVLAGAMVGKIHSAGLTLAFAIVAAVVSLNMVFS-K 135
           R H  RGN+   ++  + P +++GA+ AG +     +  L   FA    +++L MVF  K
Sbjct: 69  RAHHARGNIPWHLLTIMLPGLIVGALSAGFISSLFSAQLLKQVFAGFLVLMALQMVFPFK 128

Query: 136 SLSLRQGLPGPCATGLMGVSIGALSTWVGIGGATLTVPLLHALHTPMPVAIGTASVLGAM 195
           +    + LP      +  + +  ++  +GIGG  L +P L      M  AIG +SV G M
Sbjct: 129 AAEGERSLPASPYLFVTAMFVAIIAALMGIGGGILFIPFLTWCGVQMRHAIGFSSVTGLM 188

Query: 196 VGLPGAMAFMVNGWGDARTPLGSLGYVHVLVAAIVFPASASAMALGARFTRRVNVRVLRL 255
           + L G+++++  GW     P  +LGY+++     +   S     LGA+         L+ 
Sbjct: 189 IALFGSLSYVFAGWATQGLPEYTLGYIYLPALFGIVCTSMLTAPLGAKAASVWPTARLKK 248

Query: 256 MFAMLMAVTAVRMLWS 271
           +FA+++  T +++  S
Sbjct: 249 IFAVMLFFTGIKLALS 264