Pairwise Alignments

Query, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  492 bits (1267), Expect = e-143
 Identities = 299/743 (40%), Positives = 420/743 (56%), Gaps = 63/743 (8%)

Query: 28  LDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKA 87
           L+ LN AQR AV    G  L+LAGAG+GKT+ L  RI  L+    A P+ IL+VTFTNKA
Sbjct: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69

Query: 88  AREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIRLLKQ 147
           A EM++R+  +LG    GM W+GTFH +  +LLR H +   L  NF ILD+DDQ RL+K+
Sbjct: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128

Query: 148 LIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVS-DASAYNHRGVDFYAQYQARLKD 206
           +++  G+D+++WPAR     I+  K+  L P  +    D      R V  Y  Y+   + 
Sbjct: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREV--YTAYEQACER 186

Query: 207 LNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQYLWLRLLAGAHKNI 266
              +DF +LLL  + +++D+P +LE YQR FR ++VDE+QDTN  QY WLRLLA    ++
Sbjct: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246

Query: 267 CCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRGNSGR 326
             VGDDDQSIYGWRGA++ NI ++  DFP A ++RLEQNYRST  IL AA+ +I  NSGR
Sbjct: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306

Query: 327 LGKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGLAPVDLNNMAILVRASH 386
           LGKELWT+   GE + L   ++  +EAR++ E IE++ +  +G A    N +AIL R++ 
Sbjct: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVK--QGNA---RNEIAILYRSNA 361

Query: 387 QMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVNTPKRGL 446
           Q R  E+  L   +PYR+ GG RF+ER EI++AMAY R +    +D A ER++N P RG+
Sbjct: 362 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGI 421

Query: 447 GDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQLVTDLARWGRLAGDADTT 506
           G+K  + I+  AR + +S+ E     + +  +KG+   AL   +  +   G  A   D  
Sbjct: 422 GEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIE--GLAAKVVDMP 479

Query: 507 HMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAFEN---------LQGFLE 557
              + +  +++SG  T  Q +K      R+ENL+ELV A   FE+         L  FL 
Sbjct: 480 LHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLG 539

Query: 558 HVSL-IMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEE 616
           H SL   D    +    + +MTLH+AKGLEFP VFL G E+GLFP + S++E G   LEE
Sbjct: 540 HASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG--RLEE 597

Query: 617 ERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGY 676
           ERRLAYVGITRA     +++A  RR++G       SRF+ E+P   V+ +         +
Sbjct: 598 ERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPF 657

Query: 677 GAAAPSGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVIDLTATS 736
                   GGA  +T  +  A A                    S P+            +
Sbjct: 658 --------GGAKTATNSNLFANA--------------------SIPQ------------T 677

Query: 737 AFMVGERVFHQKFGYGAITGIEG 759
           AF +G+RV H  FG G I   EG
Sbjct: 678 AFNLGQRVQHAVFGEGVILNFEG 700