Pairwise Alignments

Query, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

Subject, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

 Score =  127 bits (318), Expect = 2e-34
 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 3/178 (1%)

Query: 36  DGALLIRFAAGDPEAAAVLTARLVPRALGVALRVLGNRAEAEDITQEAMVRLWRQAEHWE 95
           D  L+   AAGD  A  VL  R   RA+  A R +G+  +AED+ QEA++R+WR A  W 
Sbjct: 6   DEDLMSAIAAGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRAAPRWR 65

Query: 96  PGRARLSTWLYRVVMNLCIDHKRRLRGGHVDLDAIPDPPDPAKSAAEQMQDGARQDALQD 155
           P  A   TW YR+V+NLC++ +RRL    + LDA  +  DPA  A   ++      AL D
Sbjct: 66  PDAA-FGTWFYRIVINLCLNARRRLP--FLGLDAAGERADPAPDALAGLERQEEDRALLD 122

Query: 156 ALMQLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVESLTARGKRALAAILAGRRAE 213
           A+  LPERQR A++L + E  +N   A I+  SV  VE+L  R +R+L   L   R E
Sbjct: 123 AVAALPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRSLRLSLGAARKE 180