Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

Subject, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  361 bits (926), Expect = e-104
 Identities = 232/587 (39%), Positives = 321/587 (54%), Gaps = 29/587 (4%)

Query: 4   NEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63
           +  A + Y   SI+VLKGLE V++RPGMY   TD+     H++ EV+DN  DEALAGH  
Sbjct: 11  SSSASSGYSEGSIRVLKGLEPVKQRPGMYTR-TDNPL---HIIQEVIDNAADEALAGHGK 66

Query: 64  RVVVKIHADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNS---YKVSGG 120
           ++ V +HAD SVS+ D+GRGIP G+H EE     E++ T+LHAGGKFD  S   Y  SGG
Sbjct: 67  KIKVTLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGG 126

Query: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVG-DCGD-QTGTEVRFLA 178
           LHGVGVSV NALS  LE+   R+G      F  GD  E L+V   + G+ + GT VR   
Sbjct: 127 LHGVGVSVTNALSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWP 186

Query: 179 STDTFSNLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLD 238
               F         L   LR  A L  GV + L +E+  E    +  Y+GG+ +++    
Sbjct: 187 DAKYFETAALPMGELTHLLRSKAVLMPGVSVTLTNEKTKE--SQQWLYKGGLSDYLMQTL 244

Query: 239 RSKS--PVMEAPIYITGDRDEIGVEVAMWWNDSYHETVLP----FTNNIPQRDGGTHVAG 292
                 P+ E   +   + D         W  ++ E   P    + N IP   GGTH +G
Sbjct: 245 NGDPVIPLFEGGGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESG 304

Query: 293 FRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 352
            R  L   +  + +   +  K  V    +D     + VLS KV DP+F  Q K++L S +
Sbjct: 305 LRDGLFTAVKGFIELHSLLPK-GVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRD 363

Query: 353 VRPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLA 412
              +V S V   L  W  ++ +  K++    I+AA  R+   +A +   ++    V  L 
Sbjct: 364 AVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQ---RAGQKVEKRKGSGVAVLP 420

Query: 413 GKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGS 472
           GKL DC  KD S  EVFLVEGDSAGGSA+ GRD+ +QAILPLRGK+LN      DR+  +
Sbjct: 421 GKLTDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFAN 480

Query: 473 QEIGNLVMALGTGI--GRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELI 530
            EI ++ +A+G       D  ++  LRY KI I++DADVDG+HI+ LLLT F+R  P+LI
Sbjct: 481 TEIHDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLI 540

Query: 531 EGGYLYIAQPPLYKV---SRGK---SEVYLKDQAALDEYLINQGVDG 571
           E G++Y+A+PPL++V   +RGK   S+VY  D+  L   L     DG
Sbjct: 541 EAGHVYVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDG 587



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 732 EKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVE--DMVEADDLFTKLMG-DVVEP 788
           E   ++ R+KGLGEM+ +QLWETTL+PD R L+QV++   D        TKLMG      
Sbjct: 590 EGAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTSTQGEITKLMGKGEAAA 649

Query: 789 RREFIQKNALSVE 801
           RRE ++  A  V+
Sbjct: 650 RRELMELRADDVD 662