Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

Subject, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

 Score =  389 bits (1000), Expect = e-112
 Identities = 232/560 (41%), Positives = 322/560 (57%), Gaps = 22/560 (3%)

Query: 11  YGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVVVKIH 70
           Y AD+I+VL GL+ VRKRPGMY     D S  +H+  EV+DN +DEALAGHA  V V +H
Sbjct: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64

Query: 71  ADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVN 130
           AD S+ V+D+GRG+PV IH EEGVS  E+I+T+LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124

Query: 131 ALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQ-TGTEVRFLASTDTFSNLEYL 189
           ALS  + +R+ RDG E+   F  G  A  L+VVG  G + TGT V F      F + ++ 
Sbjct: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184

Query: 190 FETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPI 249
              L+  L+  A L  G+ +   D+   E+  VE  YE G++ ++         + + P 
Sbjct: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLRSYLVDSVNEFQRLPDEPF 242

Query: 250 YITGDRDEIGVEVAMWW----NDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYA 305
             +   ++  V+ A+ W     DS  E+   + N IP   GGTHV G R  L   +  + 
Sbjct: 243 CGSLAGNKEAVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFC 299

Query: 306 QSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKL 365
           +   +  +  V    +D  E +T VLS+K+ DP+FS QTK++L S E    V  +V +  
Sbjct: 300 EFRNLLPR-GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAF 358

Query: 366 AEWFEENPNQAKQIVGKIIEAALAREAAR-KARELTRRKTAMDVNYLAGKLKDCSEKDPS 424
           + W   +P    Q+     E A++    R KA +   RK       L GKL DC+ +DP 
Sbjct: 359 SLWLNAHPELGMQLA----ELAISNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPM 414

Query: 425 KTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGT 484
           + E+FLVEGDSAGGSA+  RD+  QAILPLRGKILN        +L SQE+ N+ +A+G 
Sbjct: 415 RAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGV 474

Query: 485 GIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYK 544
             G  +  + +LRY KI I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY+
Sbjct: 475 DPGATD--LAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYR 532

Query: 545 VSRGKSEVYLKDQAALDEYL 564
           +  GK   Y  D+A  D  L
Sbjct: 533 IDLGKEIYYALDEAERDGIL 552



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 7/88 (7%)

Query: 702 YGATATLVRRDRSQAIHGPL------GLLKAILEEGEKGLA-LQRYKGLGEMNPDQLWET 754
           Y A   L R D  + I+  L      G+L  ++ E ++G   + R+KGLGEMNP QL ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 755 TLDPDARTLLQVRVEDMVEADDLFTKLM 782
           T+DP+ R L+Q+ ++D+    +L  KL+
Sbjct: 584 TMDPNTRRLVQLTLDDVEATCELMDKLL 611