Pairwise Alignments

Query, 985 a.a., putative ABC transporter cyclic nucleotide-binding protein from Phaeobacter inhibens DSM 17395

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 2e-16
 Identities = 84/399 (21%), Positives = 153/399 (38%), Gaps = 28/399 (7%)

Query: 81  MLRRFRYRLISRVLRFPQPYFERVSQGELVSMITSESEPMGGLMGDAVSQPVLQAGQMLT 140
           ++   R  L +++L  P  YF+  + G L+S IT     + G   DA+   + +   ++ 
Sbjct: 111 LVHDLRVALFNKLLVLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVF 170

Query: 141 ILYFLFMQNVWFGLAAVALIPLQGWLIPMLQRQINLLNKKRIRQIRALASEIGESAAGAS 200
           +  +L   N    L  VA++P+   ++ +  ++    +KK    +  +     E+  G  
Sbjct: 171 LFAYLLWMNWHLTLVMVAILPVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYR 230

Query: 201 TLRLNGGWRYRMAVITDRLGWLYDIRFEIYQKKFFMKFLNNFITQLTPFLFYAVGGYLV- 259
            +R  GG  Y       R G       +   K+  M    +  T +   + Y+    L+ 
Sbjct: 231 VVRSFGGEAYEQ----QRFGQASQSNTD---KQLRMTKTGSLYTPMLQLVIYSAMAALMF 283

Query: 260 ----LEGKVSLGALVAALAAYKDLASPWKELLAYYNQTQDMALRWDVILERFDPPGMVDE 315
               L G  + G LVA + A   L  P ++L    +  Q      + I E+ D    VD 
Sbjct: 284 LVLFLRGDSTAGDLVAYITAAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVD- 342

Query: 316 VLMTGAPDDLQRLRGDIVVEGVN-VRDANGNLVLEDLNARFPAGKVIGVAAPSEEDRRAL 374
              TG  +  +R+ G + V  ++         VL D++     G++I +   S   +  L
Sbjct: 343 ---TGTVEK-ERVEGRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTL 398

Query: 375 AGLLTRELLPSAGEVLIDGQNMRDIHQAVIAARIGHATSRPVLFQGSFGDNVMMPIRQRP 434
           A L+ R      G++L+DG  +       +   +   T    LF  +  +N+        
Sbjct: 399 AALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQVTQHVTLFNDTVANNI-------- 450

Query: 435 LGAAQDLRRYDVAQRAGNSPDPLDASWLDPALAGFSSEV 473
             A  DL     A     + D     ++D    GF +EV
Sbjct: 451 --AYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEV 487



 Score = 42.4 bits (98), Expect = 9e-08
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 701 TVLENALFGKVSDSAGGRAEEVQKLVSDVLVKNGVRDHVVELIFDLPIALGGQGLAASFA 760
           TV  N  +G   D AG    +++   +D   K  V D + +  FD  +   G  L+    
Sbjct: 445 TVANNIAYG---DLAGAPRADIEAAAADAYAKEFV-DRLPKG-FDTEVGENGVLLSGGQR 499

Query: 761 EPLAFSRASIKRPDILILDAAMASYDLDTRIAIHKNLRQLLPDTTLIYLGSSFESPDVFD 820
           + LA +RA +K   +LILD A ++ D ++   I   L  ++   T + +     + +  D
Sbjct: 500 QRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKAD 559

Query: 821 GYYELRQGRLV 831
               + QGRLV
Sbjct: 560 QILVMDQGRLV 570