Pairwise Alignments

Query, 185 a.a., 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' from Phaeobacter inhibens DSM 17395

Subject, 189 a.a., RNA polymerase ECF-type sigma factor sigU from Caulobacter crescentus NA1000 Δfur

 Score = 77.8 bits (190), Expect = 1e-19
 Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 8   DSQAQMSPDQFKSEMIGLLPRLRRFALSLTRSGADADDLLQEACALALQKWQQYDPAQPL 67
           D Q Q S   F+ ++I L+P LR FA SL  + A ADDL QEA A A      +     +
Sbjct: 2   DQQTQKS---FERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNM 58

Query: 68  DRWMFRVLRNLWVSEIRKRRVRQGAGVVPVEEATELAASGVSGADVAETTLTARQVQSRI 127
             W F +LRN + S+ R    R    V   +E  E      +  D A      RQ    +
Sbjct: 59  KAWTFMILRNQFYSDKR----RSWRSVALDQEMAERTLVANTNFDSAIALDDLRQAMLML 114

Query: 128 ADMDPALAQPLLLVCAEGYSYREVSELLDVPIGTVMSRIHRARKLLI 174
            +      + L+L+ A G+SY E + ++ V IGTV SR+ RAR  L+
Sbjct: 115 PENQ---REALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELV 158