Pairwise Alignments

Query, 185 a.a., 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' from Phaeobacter inhibens DSM 17395

Subject, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 11/155 (7%)

Query: 18  FKSEMIGLLPRLRRFALSLTRSGADADDLLQEACALALQKWQQYDPAQPLDRWMFRVLRN 77
           FK EM+  LP LR FA+SL RS   ADDL+Q+    A  K   + P   +  W+  +LRN
Sbjct: 12  FKREMLAALPNLRAFAISLIRSRDRADDLVQDTIMKAWAKQDSFQPGTNMRAWLVTILRN 71

Query: 78  LWVSEIRK--RRVRQGAGVVPVEEATELAASGVSGADVAETTLTARQVQSRIADMDPALA 135
            + S+IRK  R V+   GV           S +S       ++  +  ++ +A +     
Sbjct: 72  EFYSQIRKSGREVQDTDGVY---------TSRLSVPPEQHGSVDLQDFRTALAKLPDDQR 122

Query: 136 QPLLLVCAEGYSYREVSELLDVPIGTVMSRIHRAR 170
           + +LL+ A G++Y E +E+   P+GT+ SR+ RAR
Sbjct: 123 EAILLIGASGFAYEEAAEICGCPVGTIKSRVSRAR 157