Pairwise Alignments

Query, 348 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

Subject, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 77.0 bits (188), Expect = 7e-19
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 11/283 (3%)

Query: 49  DVWADKVEASSDGRIKIDRYPSMQL-GGKPPELMDQAIDGVADI-VWTVVGYTPGRYPST 106
           ++W++ V   + GRI I  YP + L  G           GV D+ V + + ++P +    
Sbjct: 51  EIWSNLVRERTQGRINIKLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSP-QVRQL 109

Query: 107 EVFELPFMMTNARAASH-AYWEMFDEHMKDTEFKDVKILGTWVHG-PGIIHTTDPVESPD 164
            +F +PF+M +  A       E+  +  KD E      L    +G   I ++   +++P 
Sbjct: 110 NLFSMPFLMPDFAAIDALTTGEVGTQLFKDIERAGAVPLAWGENGYREISNSKHAIKTPA 169

Query: 165 DLRGMKIRGGGRSVN-GLLTELGATPVGMPVPAIPEALSKGVIDGTTIPWEVTTALKVPE 223
           DL+G+KIR  G  +     T LGA P  M       A++   +DG   P  V  A K+P 
Sbjct: 170 DLKGLKIRVVGSPLFLDTFTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPT 229

Query: 224 LVENHTEFTGRALYTLTFVLAMNKEKYESLPDDLKKAVDE---NSGLEFSVFAGGTMADA 280
           + + H    G     L FV  +NK+ + S  +  +  V +   ++G E    A   + + 
Sbjct: 230 VEQKHLTLWGYVADPLIFV--VNKDIWASWTEADRAIVKQAAIDAGKEGKALARKGLVEP 287

Query: 281 DTPAREFALDEGNNVITLDEEQTAIWREASQPIYKQWLDDMKA 323
             P  +   D G  V  L  EQ A + + ++P+Y +W + + A
Sbjct: 288 GKPLIKQLSDMGVTVTELTPEQRAEFVKVTRPVYDKWKNQIGA 330