Pairwise Alignments

Query, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

Subject, 1160 a.a., DNA polymerase III alpha subunit from Escherichia coli BL21

 Score =  337 bits (865), Expect = 2e-96
 Identities = 286/1081 (26%), Positives = 486/1081 (44%), Gaps = 82/1081 (7%)

Query: 26   PDYAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRD 85
            P +  L V ++++ + G +    L+ +AA LG+ ALAITD  +L G+V+ + A       
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 86   PQDALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDR 145
            P        Q  +      E+ H + L    T      ++  +   +        +  D 
Sbjct: 64   PIVGADFNVQCDLLGD---ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120

Query: 146  SAYKRLARLLTLGKRRAEKGQCLLYAED-MIDACKGMILIALPKETLSNAVSDIQKIGRQ 204
                    +L  G R  + G+ LL     ++D C     +A  +E               
Sbjct: 121  LIELNEGLILLSGGRMGDVGRSLLRGNSALVDEC-----VAFYEE--------------H 161

Query: 205  FPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLTCMRE 264
            FP+  FL         +++YL A  +LA+    P+VA  DV    ++     ++   + +
Sbjct: 162  FPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHD 221

Query: 265  NINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDLSELSYEYPHE 324
               +DD       + ++ +++  +M  +F D P AL  T EIA RCN  +    Y  P  
Sbjct: 222  GFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281

Query: 325  EAEGETPQDRLERLAREGLKRRYPDGPPDRAIKL---------MEKELSAVKDLEFPAYF 375
                 + +D L + A+EGL+ R     PD   ++         +E EL  +  + FP YF
Sbjct: 282  PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYF 341

Query: 376  LTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPD 434
            L V + +Q+++  G+ +  GRGS A S++ Y L ITD+ P    ++FERF++  R   PD
Sbjct: 342  LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401

Query: 435  IDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSG 494
             DVDF  E+R++VI+ +   YGR       T      +A IR+VG+V+G        +S 
Sbjct: 402  FDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461

Query: 495  QI---WGMSNGSVDLERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGR 551
             I    GM+         +   +   D  +   I +  ++ G  R+  +H GG VI   +
Sbjct: 462  LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521

Query: 552  LDELAPIENAAMENRTVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHE----N 607
            + + AP+         V  +DK D++   ++K D L L  LT I  A  ++ +       
Sbjct: 522  ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581

Query: 608  ITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPG 667
                IA IP  D+ ++DML  ++   VFQ+ESR   + + R++P  F D++  VA+ RPG
Sbjct: 582  PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641

Query: 668  PIQGDMVRPYIRRRNGLEK---PDP--FGPQLEQVTRRTKGVPLFQEQALQIAVVGAGFS 722
            P+Q  MV  +I R++G E+   PD       L+ V   T G+ L+QEQ +QIA V +G++
Sbjct: 642  PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701

Query: 723  AEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESH 782
               AD LRR++   ++   ++K R  F  G  KN  + E+A + F  +E FA YGF +SH
Sbjct: 702  LGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760

Query: 783  AAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQ 842
            +AA+A+++Y + WLK H+PA F  A++ +          +V +    G+++ P  +N   
Sbjct: 761  SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820

Query: 843  WDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNGYIDPEHLWLRA-----GLAP 897
            +        DG +   +G   IKG  E     II AR  G    E   L A      L  
Sbjct: 821  Y--HFHVNDDGEIVYGIG--AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876

Query: 898  AALERLAEADAFSSMGISRRDALWQVKSITTPAPLPLFNDQLDGEAINEPNVMLPRMHLG 957
              LE+L  + AF  +G  R   +  +      A     +     EAI + ++        
Sbjct: 877  RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA-----DQHAKAEAIGQADMFGVLAEEP 931

Query: 958  EEVVEDYVS----------------MRLSLRAHP----MELLRPTLPGLTCNDQLIKAPL 997
            E++ + Y S                + L L  HP    ++ +   + G+   D       
Sbjct: 932  EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991

Query: 998  QRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVWKKIYERFRRIVMGGRLLCVT 1055
            + ++  GLV+  +   T  G  +   TL+D +G   V+++    +++++++   R+L V+
Sbjct: 992  KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051

Query: 1056 G 1056
            G
Sbjct: 1052 G 1052