Pairwise Alignments

Query, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

Subject, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  947 bits (2449), Expect = 0.0
 Identities = 503/1067 (47%), Positives = 689/1067 (64%), Gaps = 52/1067 (4%)

Query: 28   YAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRDPQ 87
            YAEL VTT+F+FL GAS  +EL   A  LG+ AL + D NSLAG+VRA  A +       
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASR------- 55

Query: 88   DALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDRSA 147
             A  +R                             L++GCRL L +  +  +  P DR+A
Sbjct: 56   -ATGLR-----------------------------LVIGCRLDLAD-GMSVLVYPTDRAA 84

Query: 148  YKRLARLLTLGKRRAEKGQCLLYAEDMIDACKGMILIALPKETLSNAVSDIQKIGRQFPN 207
            Y RL RL+TLGK R  K  CLL+ +D++    GMI I +P          ++K+   F +
Sbjct: 85   YSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIGILVPDLPDDLCGIQLRKMAELFGD 144

Query: 208  HVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLTCMRENIN 267
              ++    R   +DQ  L   + LA       V   DVL H   RRQL D++TC+R    
Sbjct: 145  RAYVSLCLRRRQNDQLRLHEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTT 204

Query: 268  IDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDLSELSYEYPHEE-A 326
            ID++G     +A+R LK   +M R+F  +  AL RT EI  RC F L EL+Y+YP E   
Sbjct: 205  IDEVGFERERHADRYLKPPEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIV 264

Query: 327  EGETPQDRLERLAREGLKRRYPDGPPDRAIKLMEKELSAVKDLEFPAYFLTVHDIVQFAR 386
             G+  Q  LE    + +  RYP+G P   +K++  EL  ++ +++  YFLTV  IV++AR
Sbjct: 265  PGKDAQASLEHYVWQCVPDRYPEGLPPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYAR 324

Query: 387  SKGILCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREE 446
            S+GILCQGRGSAANS +CY+LGIT + P    ++FERFVS+ R EPPDIDVDFEHERREE
Sbjct: 325  SQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREE 384

Query: 447  VIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDL 506
            VIQWIY+ Y R +A LCATV  +R R AIR+VGK +GL +DV   LS  +W  S    D 
Sbjct: 385  VIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWSWSEEVCD- 443

Query: 507  ERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMENR 566
              +REL LN +DRRL+ T++L  +++G PRHL QH GGFV+T  RLD+L PIE A M++R
Sbjct: 444  RNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDR 503

Query: 567  TVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDML 626
             +I WDKDD++AL+ +KVDILALGMLTC+ KAF L+++H++    ++ I Q+D  TY M+
Sbjct: 504  QIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSKIEQEDSVTYAMI 563

Query: 627  CAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEK 686
              AD +G FQ+ESRAQM  LPR++PR FYDLV++VAIVRPGPIQGDMV PY+RRR G E 
Sbjct: 564  RKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEA 623

Query: 687  PDPFGPQLEQVTRRTKGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTISKYR 746
             +   P+LE V  +T GVPLFQE A+++A+V AGF+  EAD LR+S+A+F+  G +S+++
Sbjct: 624  VEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSQFK 683

Query: 747  DKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFAC 806
            DK ++GM++N Y+ E AE+ F Q+EGF  YGFPESHAA+FA++AY S+++KCH+P  F  
Sbjct: 684  DKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHYPEAFCA 743

Query: 807  ALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQWDNSLERRPDGTL-ALRLGFRQIK 865
            AL+NSQPMGFYAPAQIV D R HG+EVRP+C+N+S+WD +LER  +    A+RLGFRQ+K
Sbjct: 744  ALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRLGFRQVK 803

Query: 866  GFKEDDTGWIIAAR-GNGYIDPEHLWLRAGLAPAALERLAEADAF-SSMGISRRDALWQV 923
            G    D   ++AAR  N ++  + +W R+G+   AL +LA+ADAF  S+ + RRDALW +
Sbjct: 804  GLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEALVQLAKADAFLPSLKLERRDALWAI 863

Query: 924  KSITTPAPLPLFNDQLDGEAI-----NEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMEL 978
            K++    PLPLF    + E        EP V L +M  G  V+EDY    L+LR HP+  
Sbjct: 864  KAL-RDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTDGHNVIEDYSHTGLTLRQHPIAF 922

Query: 979  LRPTLPG---LTCNDQLIKAPLQRVSVGGLVITRQRPGTASGVIFLTLEDETGVCNVVVW 1035
            LR  L     +TC + +     + V   GLV+ RQ+PG+A GV+F+T+EDETG  N+VVW
Sbjct: 923  LRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPGSAKGVMFITIEDETGPANLVVW 982

Query: 1036 KKIYERFRRIVMGGRLLCVTGYLQREGTIVHVIAQHIEDESARLSEL 1082
              ++E+ RR V+G  ++ + G +QREG +VH++AQ + D S  L+ L
Sbjct: 983  PTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQLFDLSGDLTGL 1029