Pairwise Alignments

Query, 289 a.a., integral membrane protein PecM from Phaeobacter inhibens DSM 17395

Subject, 299 a.a., putative amino-acid metabolite efflux pump from Escherichia fergusonii Becca

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 32/304 (10%)

Query: 1   MQSRDLILTALAPMIWGSSYIVTTTLLPGQSPLLVALLR----ALPAGLLLMLMVRQLPP 56
           M  +D +L  L  ++WG +++V    L    PL++A LR    A PA   +  + R   P
Sbjct: 1   MSRKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPA---IFFVARPKVP 57

Query: 57  LNWVPRLLVLG---ALNFSIFWSLLFVAAYRLPGGVAATLGAVQPLVVVFLSALMLKTPV 113
           LN     L+LG    ++F+ F  L     + +P G+A+ +   Q    + L A      +
Sbjct: 58  LN-----LLLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERL 112

Query: 114 RTAAVLAAGLSILGVALLVLTPSAQLDG-----IGVFAGLAGAIAMAAGVVLSRKWQPPV 168
               +    L+I GV +L+      L+G     +G    L  A + A G + ++K     
Sbjct: 113 HGKQLAGIALAIFGVLVLI---EDSLNGQHVAMLGFMLTLVAAFSWACGNIFNKKIMSHA 169

Query: 169 SLLTFTAWQLTAGGLLLIPVTLWSL---------PAFPQLSAENLLGLAYMSLIGGAATY 219
           +     +  + +  + +IP  + SL          +   +    +L L Y++ +     Y
Sbjct: 170 TRPAVMSLVIWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGY 229

Query: 220 VLWFRGIARLEPSVVSLLGVLSPLSAVVLGWVFLGEVLTAKQATGAGLALFSLWLGQSGL 279
            +W   + R E   V+ L +L P+  +    + L E LT  Q  GA L +  L++   GL
Sbjct: 230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFFGAVLIMTGLYINVFGL 289

Query: 280 RWRR 283
           RWR+
Sbjct: 290 RWRK 293