Pairwise Alignments

Query, 289 a.a., integral membrane protein PecM from Phaeobacter inhibens DSM 17395

Subject, 303 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score = 76.6 bits (187), Expect = 6e-19
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 32/292 (10%)

Query: 1   MQSRDLILTALAPMIWGSSYIVTTTLLPGQSPLLVALLRALPAGLLLMLMVRQLP---PL 57
           M +R+  +     ++WG S+      +    P+ +  LR   A + L+++ R +    P 
Sbjct: 1   MDAREWAMLIALSLLWGGSFFFIGVAVKELPPVTIVTLRVSLAAVALLVVCRIMGLRLPR 60

Query: 58  NWVP--RLLVLGALNFSIFWSLLFVAAYRLPGGVAATLGAVQPLVVVFLSALMLKTPVRT 115
            W        +G LN  I + L+     ++  G+A+ L A  PL  V ++  +      T
Sbjct: 61  EWAVWRAFFGMGLLNNIIPFCLIVWGQTQIASGLASILNATTPLFTVIVAHFLTADEKMT 120

Query: 116 AAVLAAGL-SILGVALLVLTPSAQLDGIGVFAGLA---GAIAMAAGVVLSRKWQ----PP 167
              LA  L   +GVA ++  P+A     G++  +A    AI+ +   +  R+++    PP
Sbjct: 121 GNKLAGVLIGFVGVATMI-GPAAFGGSSGLWGQIAILGAAISYSFAGIFGRRFKAMGVPP 179

Query: 168 VSLLTFTAWQLTAGGLLLIPVTL-----WSLPAFPQLSAEN-LLGLAYMSLIGGAATYVL 221
             L+T T  Q+++  L+LIP  L     W+L A P L     L+G+A +S    A  Y++
Sbjct: 180 --LMTATG-QISSSTLMLIPAALLIDKPWTL-AMPGLGTWGALIGIALLST---ALAYLI 232

Query: 222 WFRGIARLEPSVVSLLGVLSPLSAVVLGWVFLGEVLTAKQATG-----AGLA 268
           +FR +A    + ++L+  L P+SA++LG + LGE L  K   G     AGLA
Sbjct: 233 FFRILASAGATNLALVTFLIPVSAILLGSLILGEQLEIKHFAGMAMIAAGLA 284