Pairwise Alignments

Query, 235 a.a., putative helix-turn-helix protein from Phaeobacter inhibens DSM 17395

Subject, 316 a.a., Transcriptional regulator, YafY family from Pseudomonas sp. S08-1

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 69/205 (33%), Positives = 98/205 (47%), Gaps = 14/205 (6%)

Query: 4   TGRLFEVIQILRAASAPIRAEDLAEKLEVSKRTIYRDIAALQGMRTPIEGEAGI--GYML 61
           T R+  V+++L+A    +   +LA +LEV  RT+ R IAAL+ +  P+  E G   GY L
Sbjct: 5   TTRVLAVLELLQA-HGQLSGSELARRLEVDGRTLRRYIAALEELGIPVLAERGRYGGYRL 63

Query: 62  RKGYDLPPLNFDEEELEALYVGLSLLMRTGDGALQEAAIRVC--RKVMECRSPGD----- 114
             G+ LPP+ F ++E  A+ +GL    R G   L EAA  V   +  +E   P D     
Sbjct: 64  VAGFKLPPILFTQDETLAVALGLLAARRLG---LSEAAPAVASAQAKLERVMPADLKPRM 120

Query: 115 -RLQVAPWGGAPQDDPEQGCVSKGLLRQAVRESRKLHLTYLGPDSGETRRVLRPLALIYN 173
             L  +     P    E G      L  A +  +++HL+Y   D  +++R   P  LIY 
Sbjct: 121 RALSESITLAVPAARAEGGDQVLLPLASAAQLRQRVHLSYRSGDGQDSQREFDPYGLIYR 180

Query: 174 VETTLLAAWCELRGGFRHFRTDRML 198
                    C LRGG R FR DRML
Sbjct: 181 DGCWYAVGHCHLRGGLRSFRLDRML 205