Pairwise Alignments

Query, 248 a.a., ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  196 bits (497), Expect = 1e-54
 Identities = 111/239 (46%), Positives = 153/239 (64%), Gaps = 7/239 (2%)

Query: 15  DTKVVRDVSFDVAEGESFALVGESGSGKSTVLKAIAGLAPDWTGDISVLGQ---PRSHGI 71
           +   V ++SFD+  GE+ +LVGESGSGKST  +A+  L     G+I   GQ     S G 
Sbjct: 336 EVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLRLVESRQGEIIFNGQRIDTLSAGK 395

Query: 72  DRAFSRTCQMVFQDPYGSLHPRKPVDWVLREPLRVHGIGARDA---RVAEVLAAVGLDQR 128
            +   R  Q +FQDPY SL PR+ V + + EPLR+HG+G  DA   RVA +L  VGL   
Sbjct: 396 LQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHGLGQGDAAAKRVAWLLERVGLRPE 455

Query: 129 FRFRYPHQLSGGQRQRVAIARALMLEPKVMLLDEPTSALDVSVQAEILNLLKALRRDQGL 188
             +RYPH+ SGGQRQR+ IARAL L PKV++ DE  SALDVSV+ +I+NLL  L+R+ G+
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLDLQREMGI 515

Query: 189 TYLMVTHNLPVVSFMCDRMAVMNKGRIVEIAPAEALHDGAFNDAYTQQLYAASGGAEPT 247
            YL ++H++ VV  +  R+AVM  G+IVE+ P  A+ +      YT++L AA   A+P+
Sbjct: 516 AYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENP-QHPYTRKLMAAVPVADPS 573



 Score =  135 bits (340), Expect = 2e-36
 Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 24/260 (9%)

Query: 4   ISLRNLDISYG----DTKVVRDVSFDVAEGESFALVGESGSGKSTVLKAIAGLAPDWTGD 59
           +S+  L+I++         VR+VS  +  GE+ A+VGESGSGKS    A+  L      +
Sbjct: 13  LSVSGLNIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGAN 72

Query: 60  ISV--------------LGQPRSHGIDRAFSRTCQMVFQDPYGSLHPRKPVDWVLREPLR 105
           +                L +     + R       M+FQ+P  SL+P   V   + E +R
Sbjct: 73  VRCGEMLLRRRNRQVIELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESIR 132

Query: 106 VHGIGARDARVAEVL-----AAVGLDQRFRFRYPHQLSGGQRQRVAIARALMLEPKVMLL 160
           +H   + +  +AE         +   Q    RYPHQLSGG RQRV IA AL   P V++ 
Sbjct: 133 LHQGASHEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCRPAVLIA 192

Query: 161 DEPTSALDVSVQAEILNLLKALRRDQGLTYLMVTHNLPVVSFMCDRMAVMNKGRIVEIAP 220
           DEPT+ALDV++QA+IL L+K L+++  +  + +TH++ VV+ + DR+ VM +G  VE   
Sbjct: 193 DEPTTALDVTIQAQILQLIKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQGEAVETGS 252

Query: 221 AEALHDGAFNDAYTQQLYAA 240
            E +   A    YTQ L AA
Sbjct: 253 VEQIFH-APTHPYTQTLLAA 271