Pairwise Alignments

Query, 309 a.a., ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

Subject, 578 a.a., putative ATP-binding component of a transport system (VIMSS) from Escherichia coli BW25113

 Score =  137 bits (346), Expect = 5e-37
 Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 4   ILSIRDLEKTYEGGFQALKGVSLDIEEGEILALLGPNGAGKTTLISTVCGITTPTSGHVS 63
           ++  ++L K + G F A   V+  ++ GEI  LLGPNGAGK+T    +CG+  PTSG   
Sbjct: 329 VIEAKELTKKF-GDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQAL 387

Query: 64  VGGHDIIEDFRAARSLIGLVPQEINLEPFETVWNSVRFSRGLFGKPRNDALLEEILR--- 120
           V G D+ E    AR  +G + Q+ +L    TV  ++RF  G++G  R  A  E+I R   
Sbjct: 388 VLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGL-RGRAQNEKISRMSE 446

Query: 121 KLSLWDKRKSRIMELSGGMKRRVLIAKALSHDPRILFLDEPTAGVDVELRKDMWDVVAEL 180
              L         EL  G K+R+ +A +L H+P ILFLDEPT+GVD   R++ W  +  +
Sbjct: 447 AFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSM 506

Query: 181 KRDGVTIILTTHYIEEAEAIADRVGVITNGEILLVEEKARLMAQ 224
              GVT+++TTH+++EAE   DR+G++  G+++       L AQ
Sbjct: 507 VEKGVTVMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLKAQ 549



 Score =  115 bits (288), Expect = 2e-30
 Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%)

Query: 3   AILSIRDLEKTYEGGFQ-ALKGVSLDIEEGEILALLGPNGAGKTTLISTVCGITTPTSGH 61
           A++++  LEK + G  + A+  +   I  G +  L+GP+GAGKTTL+  + G+  P SG 
Sbjct: 4   AVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGS 63

Query: 62  VSVGGHDIIEDFRAARSLIGLVPQEINLEPFETVWNSVRFS---RGLFGKPRNDALLEEI 118
            +V G D I++  A  +++G +PQ+  L    TV  ++      R + G+ R       +
Sbjct: 64  ATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFAR-L 122

Query: 119 LRKLSLWDKRKSRIMELSGGMKRRVLIAKALSHDPRILFLDEPTAGVDVELRKDMWDVVA 178
           L   SL         +LSGGMK+++ +A  L  +P++L LDEP  GVD   R+++W +V 
Sbjct: 123 LEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVH 182

Query: 179 ELKRDGVTIILTTHYIEEAEAIADRVGVITNGEILLV-EEKARLMAQLGKKQL 230
           EL  +G+ I+ +T Y++EAE   D V ++  GE+L   E KA      G+  L
Sbjct: 183 ELAGEGMLILWSTSYLDEAEQCRD-VLLMNEGELLYQGEPKALTQTMAGRSFL 234