Pairwise Alignments

Query, 732 a.a., uvrABC system protein B from Phaeobacter inhibens DSM 17395

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 61/300 (20%), Positives = 112/300 (37%), Gaps = 43/300 (14%)

Query: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSF----YDYYQ 122
           G   +  +A+      R  ++L  +   A +L  E + F P+  V  F  +    YD + 
Sbjct: 23  GAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDLFS 82

Query: 123 PEAYVARSDTYIEKESQINEQIDRMRHSATRSLLERDDVIIIASVSCIYGIGSVETYSAM 182
           P   +      I +      ++  + H           ++++   + ++ +         
Sbjct: 83  PHQDI------ISQRIASLYRLPELSHG----------ILVVPITTALHRLAPTRFLLGS 126

Query: 183 TQDLKVGDEYDQRQVMADLVAQQYKRNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFF 242
           +  L VG   D  Q+   L A  Y+  D  ++ G F VRG  +++FP       +R+  F
Sbjct: 127 SLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRIDLF 185

Query: 243 GEELEGITEFDPLTGEKTGTFDQIRVYANSHYVTPKPTLKQAVISIKEELKMRLDQLVGE 302
             E+E +  FDP T       D +R+     +    P  K+ V   K   + R D     
Sbjct: 186 DNEIETLRTFDPETQRSIDKVDSVRLLPAREF----PMQKEEVTRFKARFRERFD----- 236

Query: 303 GKLLEAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFA 362
                   ++ R +   + L +     GIE Y          E   TLF+++P +  VF+
Sbjct: 237 --------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPTDTQVFS 283



 Score = 39.7 bits (91), Expect = 9e-07
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 481 KRMAEDLTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPEC 540
           ++ A DL E + E  I +   H  +   E  +++ D     F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882

Query: 541 GLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETNRRRDKQ 600
             + I  ADK G       L Q  GR  R+       YA  +T + ++   +  +R +  
Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE-A 934

Query: 601 IAYNEEHGITPATVKKNVEDVLAGLYAGDVDMNRVTA 637
           IA  ++ G        ++E   AG   G+    ++ A
Sbjct: 935 IANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQA 971