Pairwise Alignments

Query, 318 a.a., putative D-ribose-binding periplasmic protein from Phaeobacter inhibens DSM 17395

Subject, 295 a.a., ribose ABC transporter substrate-binding protein RbsB from Serratia liquefaciens MT49

 Score =  112 bits (279), Expect = 1e-29
 Identities = 86/308 (27%), Positives = 150/308 (48%), Gaps = 14/308 (4%)

Query: 1   MKLRRMLATTTATAAMAVAGMAAAETMTIGITQNNVGVDSYQTTYEKAFIAAAEANA-DV 59
           MK++++    +A A  A     A    TI +  + +    + +  E A     EAN    
Sbjct: 1   MKMKKLAILASAFALSATLSANALAKDTIALVVSTLNNPFFVSMKEGA---QQEANKLGY 57

Query: 60  EVVVLDAGGDVARQIAQMEDLIQQEVDAIIIWPTNGEAVIPAVRKAHQADIPVVVTNSNI 119
            +VVLD+  + A+++A ++DL+ Q    ++I PT+ +AV  A++ A+QA IPV+ T   +
Sbjct: 58  NLVVLDSQNNPAKELANVQDLMVQAPKLLLINPTDSDAVGNAIKMANQAKIPVI-TLDRV 116

Query: 120 AEAGFPFVATFSGPDNITQGARSAEIMCDRFKSLGTENEAKVVHITGQPGYTTAIERAKG 179
           A  G   V +    DN   G  + + +    K +G +  AKV+ + G  G + A ER +G
Sbjct: 117 ASKGD--VVSHIASDNRVGGKMAGDFIA---KKVGAD--AKVIQLEGIAGTSAARERGEG 169

Query: 180 FNDRLPEVCPNVEQIDEQPGDWNREKSQQVMEAFLVKYDDIDGVYSGDDNMGVGAMNAAV 239
           F   L +     + +  QP D++R K   VM+  L  + D+  V++ +D M +GA+ A  
Sbjct: 170 FKQSLDQ--NKFKLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 227

Query: 240 AAGREGITFVGATNFAVGYEAMAAGTYWGSIYQSPVDDAEAALKSAIDLLNGEELPFLNY 299
            AG+  +  VG    A G +A+  G    ++ Q P       +++A  +L GE++     
Sbjct: 228 TAGKTDVVVVGFDGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVSATIP 287

Query: 300 FDTPKITQ 307
            D   +TQ
Sbjct: 288 VDLKLVTQ 295