Pairwise Alignments

Query, 237 a.a., putative N-acetylmuramoyl-L-alanine amidase AmiD from Phaeobacter inhibens DSM 17395

Subject, 230 a.a., N-acetylmuramoyl-L-alanine amidase AmiD from Azospirillum sp. SherDot2

 Score =  151 bits (381), Expect = 1e-41
 Identities = 82/173 (47%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 18  PSPNFNARRNDLRPHLIVLHYTAMDSAEAALERLCDPQYEVSAHYLIGADGTLWQMVREA 77
           PSPN   R +  R  L++LHYT M +A  ALERLCDP  +VSAHY +  DGT++  V E 
Sbjct: 10  PSPNHGPRADGARVELLILHYTGMPTAAHALERLCDPASQVSAHYTVDEDGTVYAHVPED 69

Query: 78  DRAWHAGAGEWCGQEDINSRSIGIELDNRGD----HPFSAPQMTRLETLLSAILQRWAIS 133
            RAWHAG   W G ED+NSRSIG+E+ N G      PF   QM  +  L   I+ R  I+
Sbjct: 70  RRAWHAGRSSWRGAEDVNSRSIGVEIVNPGHEFGYRPFPPVQMAAVAELCLGIVARHGIA 129

Query: 134 PTGVIGHSCMAPGRKSDPGPRFDWARLARQGLAA-PVPKVTGAEPAIAQEPCA 185
              V+GHS +AP RK DPG  FDW  LA +GL   P P      PA   E  A
Sbjct: 130 AADVLGHSDVAPARKEDPGELFDWPGLAVRGLGLWPTPSRADDGPADTTEVAA 182