Pairwise Alignments

Query, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

Subject, 426 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  300 bits (767), Expect = 8e-86
 Identities = 173/465 (37%), Positives = 270/465 (58%), Gaps = 44/465 (9%)

Query: 1   MDVVLLFSMVIGLLLIGVPIAVALGLSSTL---FLLIYSDSSLASVAGTLFEAFEGHFTL 57
           MD ++L    I L+LIG+P+A ALGLS+ +   ++ I   + +  VAG +       F+L
Sbjct: 1   MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGV-----NKFSL 55

Query: 58  LAIPFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVV 117
           +AIPFF+LA + M  GG++RR++ F+   VG + GGL++  + A   F A+SGSS A   
Sbjct: 56  MAIPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTA 115

Query: 118 AIGSIVIAGMRQVGYSKEFAAGVICNAGTLGILIPPSIVMVVY--AAAVEVSVGRMFLAG 175
           ++GS++I  M + GY +EFA  V  +     +L PPS   V+Y  AA   VS+  +F+AG
Sbjct: 116 SVGSVLIPEMERRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGSVSIASLFMAG 175

Query: 176 VIPGLMAGLMLMVTIYVMAKVKNLPKGEWLGWGEVAASAANASVGLLLIGIILGGIYGGI 235
           V+PGL+    LMV   + AK +N PKGE +   +     A+A  GL+ + IILGGI  GI
Sbjct: 176 VVPGLLMSACLMVLCLIFAKKRNYPKGEVIPLKQALKICADALWGLMAMVIILGGILSGI 235

Query: 236 FTPTEAAAVASVYAFFVATFVYRDMGPLKSAPKPKDMGQFLTMLPKMLGQTVVYFIPSFF 295
           FT TE+AA+A ++AFFV  F+YRD                 + LPK++ +TV        
Sbjct: 236 FTATESAAIAVLWAFFVTMFIYRDYK--------------WSELPKLMHRTV-------- 273

Query: 296 HADTRHALFEAGKLTVTLLFVIANALILKHVLTDEQVPQQIATAMLSAGFGPVMFLIVVN 355
                       +    ++ +IA A    +++T  Q+P +I T  L+      + L+ +N
Sbjct: 274 ------------RTISIVMILIAFAASFGYIMTLMQIPAKITTLFLTLSDNRYVILMCIN 321

Query: 356 VILLIGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFV 415
            +LL+ G  M+ + L++I+ P++ P+ + +G+DP+H G+IM+VN+ IG+ITPPVG  LFV
Sbjct: 322 AMLLLLGTVMDMAPLILILTPILLPVVLGIGVDPVHFGMIMLVNLGIGLITPPVGAVLFV 381

Query: 416 TSGVAGMPMMAVVRAALPFLAVLFVFLIMITYIPWISTVLPNAVM 460
            + V  + +   V+A LPF  VLF+ L+ +TYIP +S  LP+ V+
Sbjct: 382 GAAVGKVSIEKTVKALLPFYGVLFLVLMAVTYIPALSLWLPSVVL 426