Pairwise Alignments

Query, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

Subject, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

 Score =  499 bits (1284), Expect = e-146
 Identities = 259/457 (56%), Positives = 336/457 (73%), Gaps = 35/457 (7%)

Query: 1   MDVVLLFSMVIGLLLIGVPIAVALGLSSTLFLLIYSDSSLASVAGTLFEAFEGHFTLLAI 60
           M V+ LF ++   + +GVPIA++LGLS  + +L++S  S++S+A  LFE  +  +T LAI
Sbjct: 1   MAVLCLFLLLFVFMFLGVPIAISLGLSGAVSILMFSQDSVSSLAIKLFETSDA-YTFLAI 59

Query: 61  PFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVVAIG 120
           PFF+L+ +FMTTGGVA+R+I F+ ACVGH+ GGLAIA V ACMLFAALSGSSPATV A+G
Sbjct: 60  PFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVG 119

Query: 121 SIVIAGMRQVGYSKEFAAGVICNAGTLGILIPPSIVMVVYAAAVEVSVGRMFLAGVIPGL 180
           SI +AGM + GY K F AG+ICNAGTLGILIPPSIVMVVY+AA E SVG++F+AGVIPGL
Sbjct: 120 SIAVAGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATETSVGKLFMAGVIPGL 179

Query: 181 MAGLMLMVTIYVMAKVKNLPKGEWLGWGEVAASAANASVGLLLIGIILGGIYGGIFTPTE 240
           + GLMLM+ IY++A++K LP      + E   SA  A  GLLL+ IILGGIY G+FTPTE
Sbjct: 180 LLGLMLMIAIYIVARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILGGIYSGMFTPTE 239

Query: 241 AAAVASVYAFFVATFVYRDMGPLKSAPKPKDMGQFLTMLPKMLGQTVVYFIPSFFHADTR 300
           AAAVA+VY+ FVA F+Y+DM  L+  PK                                
Sbjct: 240 AAAVAAVYSAFVALFIYKDM-QLRDCPK-------------------------------- 266

Query: 301 HALFEAGKLTVTLLFVIANALILKHVLTDEQVPQQIATAMLSAGFGPVMFLIVVNVILLI 360
             L E+G+L + L+F+IANA++  HVLT EQ+PQ+I   +LS G  P+ FLI+VNV+LLI
Sbjct: 267 -VLLESGRLAIMLMFIIANAMLFAHVLTTEQIPQEITAWVLSEGLTPIGFLIMVNVVLLI 325

Query: 361 GGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVA 420
            G FMEPS +++I+AP+ FPIA++LGIDPIHLGI+MVVNMEIG++ PPVGLNLFVTS V 
Sbjct: 326 AGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVGLNLFVTSAVT 385

Query: 421 GMPMMAVVRAALPFLAVLFVFLIMITYIPWISTVLPN 457
           G+ +   +RAALP+L +L VFLIM+TY+P+IS  LP+
Sbjct: 386 GLTLGQTIRAALPWLMILLVFLIMVTYLPFISLALPH 422