Pairwise Alignments

Query, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  290 bits (742), Expect = 6e-83
 Identities = 170/465 (36%), Positives = 268/465 (57%), Gaps = 44/465 (9%)

Query: 1   MDVVLLFSMVIGLLLIGVPIAVALGLSSTL---FLLIYSDSSLASVAGTLFEAFEGHFTL 57
           M+  +L    I L+LIG+P+A ALGLS+ +   ++ I   + +  VA  +       F+L
Sbjct: 1   MEAFILLGSFIVLILIGMPVAYALGLSALIGAWWIDIPLQAMMIQVASGV-----NKFSL 55

Query: 58  LAIPFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVV 117
           LAIPFF+LA + M  GG++RR++ F+   VG + GGL++  + A   F A+SGSS A   
Sbjct: 56  LAIPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTA 115

Query: 118 AIGSIVIAGMRQVGYSKEFAAGVICNAGTLGILIPPSIVMVVY--AAAVEVSVGRMFLAG 175
           ++GS++I  M + GY +EF+  V  +     +L PPS   V+Y  AA   VS+  +F+AG
Sbjct: 116 SVGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAG 175

Query: 176 VIPGLMAGLMLMVTIYVMAKVKNLPKGEWLGWGEVAASAANASVGLLLIGIILGGIYGGI 235
           ++PGL+   ++M    + AK +N PKGE +   E    A  A  GL+ + IILGGI  G+
Sbjct: 176 IMPGLLLSAVMMGLCLIFAKKRNYPKGEVIPLREALKIAGEALWGLMAMVIILGGILSGV 235

Query: 236 FTPTEAAAVASVYAFFVATFVYRDMGPLKSAPKPKDMGQFLTMLPKMLGQTVVYFIPSFF 295
           FT TE+AAVA V++FFV  F+YRD        K +D       LPK++ +TV        
Sbjct: 236 FTATESAAVAVVWSFFVTMFIYRDY-------KWRD-------LPKLMHRTV-------- 273

Query: 296 HADTRHALFEAGKLTVTLLFVIANALILKHVLTDEQVPQQIATAMLSAGFGPVMFLIVVN 355
                       +    ++ +I  A    +V+T  Q+P +I TA L+      + L+ +N
Sbjct: 274 ------------RTISIVMILIGFAASFGYVMTLMQIPSKITTAFLTLSDNRYVILMCIN 321

Query: 356 VILLIGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFV 415
            +L++ G  M+ + L++I+ P++ P+   +G+DP+H G+IM+VN+ IG+ITPPVG  LFV
Sbjct: 322 FMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIMLVNLGIGLITPPVGAVLFV 381

Query: 416 TSGVAGMPMMAVVRAALPFLAVLFVFLIMITYIPWISTVLPNAVM 460
            S +  + + + V+A +PF   LF+ L+ +TYIP IS  LP+ V+
Sbjct: 382 GSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAISLWLPSVVL 426