Pairwise Alignments

Query, 785 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

Subject, 489 a.a., TRAP dicarboxylate transporter subunit DctM from Agrobacterium fabrum C58

 Score =  132 bits (333), Expect = 3e-35
 Identities = 108/347 (31%), Positives = 169/347 (48%), Gaps = 45/347 (12%)

Query: 456 IGVLLIALVDVVAIAPTTSPGITVLLIALPTLLAL-YGCRIAAGRSARNDLIRVVFPPLI 514
           +G +L A+   VA +      IT+ +I+LP +L   Y  R+A G  A +  I  V PP +
Sbjct: 111 VGAILGAITGTVAASV-----ITMGVISLPIMLKYGYNPRLATGVIAASGTITQVIPPSL 165

Query: 515 LIVAVLGSILGGITNPTPAAALGAGGA--------IMLAAYRKLQD--------QGKSGK 558
           +++ VL   LG         A+G            I+L +  + +D        +G+  +
Sbjct: 166 VLI-VLADQLGKSVGDMYLGAIGPSILQVTIFMLFILLMSIVRPKDLPALPPEARGELNR 224

Query: 559 IIIWATFA------VAICILVGVNFDLRINGRSGVSAETVI-AFGVAYGAYLFALFGLLY 611
            +++   A      V I +++G  F        G++  T   A GV     L A    L 
Sbjct: 225 ALVFRVLAGMIPSIVLIFLVLGTIF-------LGLATPTEAGALGVVGAMVLAAAHRRL- 276

Query: 612 GCWVLFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGEHYIQQFLKSFDSELK 671
             W L K G+       T  +TSMV  IL+G+   +LV     G  +I+  L        
Sbjct: 277 -SWDLVKQGM-----HSTMHITSMVVFILVGATCFSLVFQGMDGSLWIEHMLSGIPGGPI 330

Query: 672 VFLI-VMVVLFILGFVLDFLEIIYIVIPIVGPVIYGGSFDPKWVTIMVAVNLQTSFLTPP 730
            FLI V + +F L F LDF EI +IVIP++ P+      D  W  +++ +N+QTSF+ PP
Sbjct: 331 GFLIFVNIFIFFLAFFLDFFEIAFIVIPMLAPIAQSLGIDLIWFGVLICINMQTSFMHPP 390

Query: 731 FGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWMFPSIVT 777
           FGFALFYLR +AP+ V T+ IY G +P++ +Q++ + I+  +P  VT
Sbjct: 391 FGFALFYLRSIAPRSVKTSDIYMGAIPWLGMQLILVAIVIFWPESVT 437



 Score =  129 bits (325), Expect = 3e-34
 Identities = 74/200 (37%), Positives = 110/200 (55%), Gaps = 35/200 (17%)

Query: 116 RVLAGASIETLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLA 175
           R+    S + LLA+  F  MG  LER  +A DLL    ++FG +PGGLA ++++VGA L 
Sbjct: 57  RIFGIISNDLLLAIPFFTFMGAILERCGLAEDLLEGTGKLFGAIPGGLAYAVIIVGAILG 116

Query: 176 ASTGIVGATVVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGD 235
           A TG V A+V+TMG+++LP ML+  Y+P LATGVIAASGT+ Q+IPPS+V+++L    G 
Sbjct: 117 AITGTVAASVITMGVISLPIMLKYGYNPRLATGVIAASGTITQVIPPSLVLIVLADQLGK 176

Query: 236 LYSTAQEARAQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNP 295
                                       SVG ++  A+ P I+   ++ L+    +++ P
Sbjct: 177 ----------------------------SVGDMYLGAIGPSILQVTIFMLFILLMSIVRP 208

Query: 296 EKAPAVVLEGGTGEPITRGE 315
           +  PA+        P  RGE
Sbjct: 209 KDLPAL-------PPEARGE 221