Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

 Score =  154 bits (390), Expect = 2e-42
 Identities = 108/318 (33%), Positives = 161/318 (50%), Gaps = 36/318 (11%)

Query: 1   MITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVP 60
           ++ VS + A QRID +L      V +  I ++ RKGE+R++ GR+K   ++ AG +VRVP
Sbjct: 13  LLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVRVP 72

Query: 61  PLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGL 120
           P+      P       +++   + +   +I++D+ +IV+NKP G+AV GGSG    V   
Sbjct: 73  PVRV----PERDEPVPLAQGLLQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFGVIEA 128

Query: 121 SAALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVPT 180
              L+ DA+E   LVHRLD+DTSG+L++A+ R   + L  A R     K Y ALV G   
Sbjct: 129 FRQLRPDAKEL-ELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWA 187

Query: 181 PYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVA 240
             +  ++  L K+        GE+M+     EVD     K + T +  L R    A  V 
Sbjct: 188 SSIKSVRAPLQKS----NLRSGERMV-----EVDEE--GKEALTLFKVLRRFGDFATMVE 236

Query: 241 MEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHLHCRRMA 300
            +P+TGRTHQ+R H    GH IAGD KYG        + +  ++  +  K+L LH     
Sbjct: 237 AKPVTGRTHQIRVHTLHAGHCIAGDTKYG-------DEDFSKEIRDLGGKRLFLHA---- 285

Query: 301 FEHPTTKKPLSITAPLPD 318
                      +T PLPD
Sbjct: 286 ---------YMLTVPLPD 294