Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

 Score =  161 bits (407), Expect = 2e-44
 Identities = 110/318 (34%), Positives = 166/318 (52%), Gaps = 36/318 (11%)

Query: 1   MITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVP 60
           +I V+ + A QRID +L      V +  + ++ RKGE+R++ GRVK   ++ AG +VRVP
Sbjct: 13  LIEVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVP 72

Query: 61  PLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGL 120
           P+   + +   AP   +++   + +   ++Y+D A+IV+NKPAG+AV GGSG +  V   
Sbjct: 73  PVRLPE-RDEPAP---VAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEA 128

Query: 121 SAALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVPT 180
              L+ DA+E   LVHRLD+DTSG+L++A+ R   + L AA R     K Y ALV G   
Sbjct: 129 LRQLRPDAKEL-ELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWP 187

Query: 181 PYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVA 240
               ++   L+K+        GE+M+ ++          K + T +  L R    A  V 
Sbjct: 188 TSKKQVNAPLLKS----NLRSGERMVEVNEE-------GKEALTLFRVLRRFGDFATIVE 236

Query: 241 MEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHLHCRRMA 300
             PITGRTHQ+R H    GH IAGD KYG        + +  ++  +  K+L LH     
Sbjct: 237 ARPITGRTHQIRVHTLHAGHMIAGDSKYG-------DEDFSREIRELGGKRLFLHA---- 285

Query: 301 FEHPTTKKPLSITAPLPD 318
                     ++T PLPD
Sbjct: 286 ---------YALTVPLPD 294