Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 319 a.a., 23S rRNA pseudouridine(955,2504,2580) synthase from Escherichia coli BL21

 Score =  165 bits (417), Expect = 2e-45
 Identities = 111/321 (34%), Positives = 171/321 (53%), Gaps = 21/321 (6%)

Query: 1   MITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVP 60
           ++ ++ D+A QRID +LR     V +  I ++ RKGE+R++  R+K   ++ AG  VR+P
Sbjct: 10  IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69

Query: 61  PLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGL 120
           P+  ++ +  EA S  + +  A  +   ++Y+DD ++VLNKP+G AV GGSG +  V   
Sbjct: 70  PVRVAE-REEEAVSPHLQKVAA--LADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126

Query: 121 SAALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVPT 180
             AL+ +A     LVHRLD+DTSGVL++A+ R A +SL    R +  +K Y ALV G   
Sbjct: 127 LRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185

Query: 181 PYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVA 240
            ++  ++  L+K         GE+++ +           K S T +    R A  A  V 
Sbjct: 186 SHVKSVQAPLLK----NILQSGERIVRVSQE-------GKPSETRFKVEERYAF-ATLVR 233

Query: 241 MEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHLHCRRMA 300
             P+TGRTHQ+R H    GHPIA D +YG    +      G  L      +L LH   + 
Sbjct: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-----NRLFLHAAALK 288

Query: 301 FEHPTTKKPLSITAPLPDHMK 321
           F HP T + + I AP+ + +K
Sbjct: 289 FTHPGTGEVMRIEAPMDEGLK 309