Pairwise Alignments

Query, 182 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 183 a.a., RNA polymerase sigma-70 factor from Phocaeicola dorei CL03T12C01

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 8   IIEGDQIAFEIVFKLSHKKVYAYFNKKTASKELADELTQLAFIKMWRFRHTLTPDFTLDT 67
           I EGD  AFE VF+  +  +  Y    T S E A+E+ +  F  +WR R  L    ++ +
Sbjct: 11  IREGDIKAFEDVFRRYYSPLCWYAMSITGSMEAAEEIVEELFYGVWRDRERLPLFRSMKS 70

Query: 68  QLFRIAKTTLLDHFKKLATEERKLKSFYQDNIAELYAPSSDYETNQQ-----LEAVLNQL 122
            L+   +     + + L     K + F           S   E   Q     ++  L ++
Sbjct: 71  YLYIAVRNQSFQYCEHLEVRN-KYREFVLSRKGRTQDSSPQEEIEYQELRHLIDTTLARM 129

Query: 123 PPTRKKVFILSRIEGYSYNEIAEQLSISPRTVEKHISLALKQL 165
           P  R ++F + R+EG  Y EIA QLS+S +TVE  ++ ALK L
Sbjct: 130 PERRLRIFRMHRMEGKKYAEIASQLSLSVKTVEAEMTKALKAL 172