Pairwise Alignments

Query, 182 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 193 a.a., RNA polymerase sigma-70 factor from Phocaeicola dorei CL03T12C01

 Score = 72.4 bits (176), Expect = 4e-18
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 5   IQHIIEGDQIAFEIVFKLSHKKVYAYFNKKTASKELADELTQLAFIKMWRFRHTLTPDFT 64
           I  + +GD+  F ++F L + ++ +   +    + +A+++ Q  F+  W  + TLTP+  
Sbjct: 8   INKVQKGDEAEFRLLFNLFYPRLMSVACR-FVPEHIAEDIVQSVFVMYWEQKSTLTPN-A 65

Query: 65  LDTQLFRIAKTTLLDHFKKLAT-----------EERKLKSFYQDNIAELYAPSSDYETNQ 113
           + + L++  +   L++ K  A            EER        +  EL+    + +  +
Sbjct: 66  IHSFLYKCTQNNCLNYLKHQAVVLGHEEEVRLAEERMAFQLAGSDANELWNEVVERDIRK 125

Query: 114 QLEAVLNQLPPTRKKVFILSRIEGYSYNEIAEQLSISPRTVEKHISLALKQL 165
            LEA +++LPP  ++ F LS  +  +Y EIAE + IS RTVE+H+  A K L
Sbjct: 126 LLEASISKLPPKCRQAFELSYFKEMTYKEIAEAMHISSRTVEEHVQKATKFL 177