Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 47.8 bits (112), Expect = 1e-10
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 15  NYGKRLFSFIRGRVNTDEDAEDILQDVWFQLSNQPEAGAIEQISGWLYRVARNKITDKYR 74
           NY + L  F+  ++   + AED++ D + ++  +     IEQ   +LYR A N + D +R
Sbjct: 4   NYYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHR 63

Query: 75  KQKEESLEDFTFEGEDGEINFKEILLAEAYSPEEESLKKLFWDQLFLALEELPENQRYVF 134
           +     +E    +  D E  F       + SP          + L  AL ELP   R  F
Sbjct: 64  RNALRQVE--PLDVLDAEERF------ASSSPHTHHDHGQRLELLERALAELPPACRDSF 115

Query: 135 VQNELEERTFQELADESGENIKTLISRKGYAVKHLRNRLQ 174
           +  +LE  T  ++A+    +   +      A+KH R R++
Sbjct: 116 LLRKLEGLTHLQIAERLSISRAMVEKHIVNAMKHCRVRMR 155