Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 200 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 69.3 bits (168), Expect = 4e-17
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 13  VANYGKRLFSFIRGRVNTDEDAEDILQDVWFQLSNQPEAGAIEQ---ISGWLYRVARNKI 69
           V  +  ++++ I   V     AED++QD + +  +  + G   +    S W+ R+A N  
Sbjct: 28  VNRHKNKVYTTILMIVKDSYTAEDLMQDAFIKAIHTMKGGRYNEEGKFSSWICRIAHNLA 87

Query: 70  TDKYRKQKEESLEDFTFEGEDGEINFKEILLAEAYSPEEESLKKLFWDQLFLALEELPEN 129
            D +RK+K   +       EDG   F  +  +E  S E   +K+    +L   ++ LP++
Sbjct: 88  IDHFRKEKRSPVITL----EDGSNVFNTMSFSED-SAESLQIKEDTHARLRELIQTLPQS 142

Query: 130 QRYVFVQNELEERTFQELADESGENIKTLISRKGYAVKHLRNRLQN 175
           QR V +     + +FQE+AD +G +I T + R  YA+ +LR ++ N
Sbjct: 143 QREVLMMRHYADMSFQEIADATGVSINTALGRMRYALINLRKKMLN 188