Pairwise Alignments

Query, 502 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 485 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  142 bits (358), Expect = 3e-38
 Identities = 135/505 (26%), Positives = 216/505 (42%), Gaps = 50/505 (9%)

Query: 11  GFSLLSITACKKDYLDTKPTDQVDNSALFTSAANAKNALNGVYRYMFERSTTVPDNAQQN 70
           G SL+  T+C  D +D +P  + +   +F +    + AL G Y     R T    N    
Sbjct: 15  GLSLVLATSCD-DIIDVEPVYEKEKVTVFKNLNEFEYALTGAYALF--RQTGYYGNGSAT 71

Query: 71  KPGVGGIMLYMDFMGEDIGISSS---NWYTSDGGSWISHRTDNSTLLTYMYRTYYRIIGN 127
               G   +  D MG ++  ++    N+ T     W+    D+   LT+  +  Y II  
Sbjct: 72  ---TGAFSVLPDMMGTNLVETNEELGNYITQT--DWVYVADDSDIALTW--QAAYYIINQ 124

Query: 128 VNYIIDNIDQASGAAADK--NIVKAEALTLRGYAYFGLVQLYGKRYDAAAKPNNQLGVPL 185
            N ++ N  +    A +K  N+++ +AL +RG  +F L++ +G  Y+   + +  LG+P 
Sbjct: 125 ANQVLSNNIEQFKTADEKRVNLLRGQALAIRGLVHFDLLRYWGVSYE---RNSTALGIPY 181

Query: 186 LLASTDTNKP-RATVESVYAAIVSDLETAIALNATA-------SNKTHAGATVAKGIRAR 237
              +     P R +V+  Y  I++DL+ A  L           SNK++      K + AR
Sbjct: 182 KTTTNQEEMPSRLSVKESYDKILADLKEAEILLGDVDKAINIGSNKSYIDQLAVKAMLAR 241

Query: 238 VALVMQDYPNAIKYAKDIVDANQYPLLSVTDYQAGFNNAALGEFIWASMPTLDQGDTFGS 297
           V+L  ++Y  A  YA  ++ A  YPL S  D+   + +A+  E IW+   +  QG    S
Sbjct: 242 VSLYARNYEEAEAYATAVIHA--YPLASKADFPEIWKDASASEVIWSVAYSAGQGSPSNS 299

Query: 298 YFAQIAYNANTSFMRGNPKRINSALYDQISATDVRKKMWEPVPTTVNFPLPATNFARQPY 357
            +   A N    +    P     A+YD+  A D+R   +            A     +  
Sbjct: 300 LY--YAANNRNGY---RPSATLEAMYDK--ANDIRFDAYFG---------SAERAGTERR 343

Query: 358 MSRKFSVKEVGGPSLGDVPLMRTSEMYLILAEAYAKTPGSEAAARTVLFNLVKQRDPAAV 417
           +  K   +     +L +  + RT EMYLI AEA A   G E+     L  L   R     
Sbjct: 344 IVNKHMGRGTAKDNLVNWKVFRTGEMYLIRAEARAMQAGRESLGLEDLNTLRTARINNYA 403

Query: 418 ISVNTGQALINEILFNRRIELWGEGHRWLDLKRLNLPLDRTVVPNYVSASVAGTLTIPAG 477
               +GQ LI+ I   R+ EL+ EGH+W DLKR    + RT          A   T+   
Sbjct: 404 PVALSGQDLIDAIAVERQKELFAEGHQWFDLKRTTRIISRT------DCGSASQCTLEPD 457

Query: 478 DVKWQFLIPRAEMEANSGLAGQQNP 502
              W + +P+ E+ AN  +  QQ P
Sbjct: 458 SRAWAWPVPQGEIIANMNIRSQQTP 482