Pairwise Alignments

Query, 1028 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1057 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  213 bits (542), Expect = 6e-59
 Identities = 273/1113 (24%), Positives = 460/1113 (41%), Gaps = 172/1113 (15%)

Query: 17   LLLCLYLGLSAYAQTPSVKGVIKDA--KETIVGATVIAQNVQTGIKTTTSSDKNGVFSFP 74
            + LC  +     A  P+V+G + DA   E ++GAT+    VQ G    T SD +G FS  
Sbjct: 16   ITLCFAVLSHQLAAQPTVRGRVTDAIEGEPLIGATI----VQKGTTNGTVSDDSGEFSIS 71

Query: 75   RLAAGPYKFTINFIGYETKTVTGEVRDGGTFSLSVVLKESSTSLDKDVIVTGTGITRNKN 134
              A     F+  +IGY +K    EV+ G   ++ V L+E   SL+  V+V G G T+ K+
Sbjct: 72   VPANATLIFS--YIGYLSK----EVQIGNQTTVDVALEEDLKSLE-GVVVVGYG-TQKKS 123

Query: 135  SFTGVTATFSGETLKSIGNNNIIQSLR-TLDPSFILMENNLAGANPNVLPVIEVRGKTSV 193
              TG   T SG+ L SI + +  Q ++  +  + I       G N N++    +RG +S+
Sbjct: 124  DLTGAVGTISGKELLSIPSPSFDQMMQGKIAGTQITQTTGAPGGNVNIV----IRGVSSI 179

Query: 194  PTATLKDQFGTDPNQPLFILDGFE----------------------------TTLQNIVD 225
                      T  NQPL+++DGF                             + +  + +
Sbjct: 180  ----------TGGNQPLYVIDGFAMGAGGSGSDVSSFNGNSFSSGGMAQNTASKINPLTN 229

Query: 226  LDMNRVASVTILKDAASTALYGARASNGVVVVETIRPKAGQ--LQFTYSNDFRVESPDLS 283
            ++   + S+ ILKDA++TA+YG+R +NGVV++ T R K GQ  + F  SN  ++ +  L 
Sbjct: 230  INPADIESIEILKDASATAIYGSRGANGVVIITTKRGKQGQSKINFDASNGVQMIANKL- 288

Query: 284  GYNMMNAAEKLQFEKLAGRYNYFV------SNATYQQIGLDQIYNNHLAAVKRGVDTYWL 337
              +M+NA +  +F    GR N +V      S+    +    ++           V+T W 
Sbjct: 289  --DMLNARQFAEFVA-DGRDNAWVLSGGNASDPNEVRSAGTRVKPEFRNPEAITVNTNWQ 345

Query: 338  NEPVQTGITENNSIYAQGGDQAFTYGVGLNYKTQSGAMKGSGRDTWSGNINL-TYRKGKF 396
            +   +  + ++  + A GG +   Y V   Y  Q G +KGS    ++   N+  Y   + 
Sbjct: 346  DVIFRPSVVQSYQLSASGGKEGVDYYVSGGYFNQEGIIKGSDFKKFNLRSNIDAYLTKRL 405

Query: 397  NIN-NILYVRGYSSTDSPYGSFSNFVNANPYYIKDPSQRYLEVSNTSTYSEL------KV 449
             +  +I     +       G        +      P+    + +   T SEL       V
Sbjct: 406  KLGISIAGSHSWGKFARAEGHLGQRGLISAALASSPALSVYDKNGNYT-SELLDPLGVPV 464

Query: 450  RNPLYDASLPNTSTAENLEVQNNFQLNYDISSDLQIRGGLQLVKGSVTAVSFLAPENSVF 509
             NPL       + T  +  V  N  L Y+I   L ++  +         ++++A    ++
Sbjct: 465  ENPLLIID-EFSDTRSSTNVFTNNYLEYEIVEGLTLKSSI--------GINYIADHTRLW 515

Query: 510  EEVGALQRGKYTNSKT------DNFSYQGNMLLTYGKVFGGKHSVTANARAEINNRDFRA 563
            +     + G  T+  T       N ++    +L Y +   G H V A             
Sbjct: 516  KSSEIGEWGAKTSLATAGVHQRTNLNWLNENVLNYRRSINGVHDVDA------------I 563

Query: 564  VGFVAEG-----FPEGSTGNPRFAYSYQSNAAPTASS---SVYRTANATLSANYAYDMRY 615
            VGF A+         G+T  P     Y +     A +   S +   +     NY Y  +Y
Sbjct: 564  VGFTAQKDKTDWLQAGATDFPTDHIEYLAGGNVNAGTNYVSEWSMLSLLARVNYTYKGKY 623

Query: 616  LFDFSYRLDGSTAFGKNKQFSPYWSSGIGWNLNREHFFANTRWINRLKLYANIGVTGNQN 675
            L   + R DGS+ FG N ++  + S  +G+ ++ E F  +  +I+ LK+ A+ GV+GN  
Sbjct: 624  LVTGTVRRDGSSRFGPNNRWGTFPSFSVGYRISEEPFMQSVTFIDNLKIRASYGVSGNNL 683

Query: 676  YGNITSVSVYNFNSSTNYNQFGQGVSLATLGNPDLKPQKTTQISAGLDYSLFNDRLFGYV 735
             GN   + +       + NQ   G+   +L N +L  +++ Q + GLD +LF++RL   V
Sbjct: 684  IGNYAHIGLLGTTRYVSSNQAALGIIPQSLANENLTWERSLQTNIGLDVALFDNRLTLSV 743

Query: 736  SVYNKRTDPLVVAVDLPSSTGVFNYPLNVGILNNKGMEFKLNYAPIYNIEKRIVWVVGAS 795
              Y      L++   LP+ +G      N+G L NKG+EF L+ A + N      W    +
Sbjct: 744  DAYKNHKKDLLLNASLPAISGFSASTQNIGELENKGLEFTLD-AVVVN-TGNFSWNSNFN 801

Query: 796  GNLNKSKYDGFGNALRSLNKQQENNKTLLRFTDGYSP----------------DDIWAAK 839
              +NK+K       L S N + EN  +  +FT+   P                DD+ A  
Sbjct: 802  IGVNKNKV----LVLNSDNARIEN--SAYQFTEVGRPISSFYMLHAIGVFQDWDDVDAHP 855

Query: 840  SLGIDPATGREMF--LRNDGQYTFDYSLGSVQAVGNTNPVIEGIFTSTFSFKGFNLGVYL 897
                D   G   F  +  DG  T D        VG+  P     F +   +  F L + +
Sbjct: 856  KQHPDVQPGDLKFEDVNGDGVITND----DKTFVGDPWPDYTFGFNNRLEYDNFALSISV 911

Query: 898  RYRLGGDIFNTALYNKVENITYTNIASNQDKRALYD-RWQK---PGDVAQFKGISQTATT 953
                G D++    +   E I   N A  Q++ A+ D RW+    PG+    + I      
Sbjct: 912  TGSQGNDVY----FQGGEII--LNAAGVQNQLAVTDERWKSLDDPGNGFTPRAIRSDYAK 965

Query: 954  PMS--SRFVQKENTISGESISMGYTFDRSAWLKKFGMRSLNLSALTNDIFRISSVK---- 1007
             +S  SR++   + +  ++I++ YTF R   L+K  +  L++    ++++  +       
Sbjct: 966  GISSNSRYLFDGSYVRIKNINLSYTFQRQT-LEKINLSGLSVYGDISNVYTFTDYPGYDP 1024

Query: 1008 ---------RERGID---YPFANTVSFTLRVSF 1028
                        GID   YP     +  LRVSF
Sbjct: 1025 EASSTGDNIAASGIDYFSYPIPRIFTLGLRVSF 1057