Pairwise Alignments

Query, 182 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 180 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 77.8 bits (190), Expect = 1e-19
 Identities = 46/156 (29%), Positives = 89/156 (57%), Gaps = 7/156 (4%)

Query: 12  LQTFQTVYRLFNQKLYAYVLKKTGSVYMAEEVVQLTFIKLWEKRENLSMEYSLSAQIFRI 71
           L+ F  +Y  + + +Y   + +  S  +A++VVQ  FI  W +R++L +  SL A +   
Sbjct: 19  LRAFDQLYHQYWEVMYQAAVGRLKSQDLAQDVVQDIFIDFWNRRKSLDINVSLKAYLLTA 78

Query: 72  AGTIL---IDQL-RKEAVGKKHLTLVENDYALRTEVDQPEVHHALEQAIEQMAPVRKKVF 127
               +   +D+L R E +   HL   E   A  + ++  E+   +E  +EQ+AP+  K+F
Sbjct: 79  VKYKVFRKVDKLNRHEQLSASHL---EELSASASFMEFEEIFDLIEVKLEQLAPMHHKIF 135

Query: 128 KLSKVEGYSYKEIAEMLSISPKTVENHISQALKQLR 163
           +++K+EG S +EI+E ++++P++V N +S+  K L+
Sbjct: 136 RMNKMEGVSVREISEQVNMAPQSVHNVLSKTTKYLK 171