Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1034 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  328 bits (842), Expect = 1e-93
 Identities = 289/1039 (27%), Positives = 469/1039 (45%), Gaps = 126/1039 (12%)

Query: 130  VSGKVV---DENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAI-LVIKYIGFDPK 185
            VSG V+   D+ G P  G +V+LK +  GT T +DG +++S  + G I LV   IGF+ +
Sbjct: 39   VSGTVISGTDQLGLP--GVNVLLKGSQTGTITDIDGNYSLSVPEGGNIVLVFSMIGFEKQ 96

Query: 186  EVKAARELG-TIKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLA 244
            E          I L+   S LD V +  Y T  K     +  +++ ++    ++++    
Sbjct: 97   EATVGNNNHINITLSEDISALDEVVVVGYGTVKKSDLTGSVAALKKEDFNPGVITSAEQL 156

Query: 245  LQGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLW 304
            + GK+ G+Q+ Q S   G  I+V I+GV S    +SP +V+DG+P+S+++ V TG     
Sbjct: 157  IAGKMPGVQVVQNSAEPGGGISVNIRGVGSVNSGNSPLYVIDGLPFSNSSAV-TG----- 210

Query: 305  GEATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVIT 364
                       G+  G      +PLS +NP DIESI+VLKDA ATAIYG+R ANG I++T
Sbjct: 211  ----------VGDRFGAPRTQRSPLSSINPADIESIEVLKDASATAIYGARGANGVILVT 260

Query: 365  TKRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVISATNYDLNGIW 424
            TK G+ G + I++ +  G        + L+  +Y  + N               D NG  
Sbjct: 261  TKNGRKGKMSINYDAYAGVQNVANKIELLSGREYYEVINAIIDEGGGSEQDRVEDFNGTG 320

Query: 425  DKEKFTDWQKELIK-TTGYDDASLSVSGGTLNSSYRLNLTGNRQNSAYARN-FRNDNIAL 482
                 TDW  E+ +   G    +LS+SGG  +++Y ++L    Q      + F+   I L
Sbjct: 321  -----TDWLGEVYQPNAGIQSHNLSMSGGNESTNYMVSLNYFDQKGLIINSGFKRYGIRL 375

Query: 483  SISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLNWD 542
            ++      A+++FK+G     LN  +N  S ++ T G F   L  +A  ++         
Sbjct: 376  NLD---HKASERFKMG-----LNMSSNY-SRDEFTPGGF--QLNEHAGVVFAA-----MH 419

Query: 543  MDPTGTISRFRNPLSTY-------LTNPFEV--------KTNNFTSNITASYNIVNGLDF 587
            MDPT  I   RN    Y       + NP  +         T      I   Y I+ GL  
Sbjct: 420  MDPTLPI---RNDNGDYVISSHINIDNPVALANGKRGIGNTYRTFGTIYGEYKILPGLSA 476

Query: 588  KTSFGYN--------RLDQQEFTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILY 639
            K + G +         +D+     N A  +A   + T           ++NY++E  + Y
Sbjct: 477  KLNIGGDVSNQVREFYIDRSTLDGNAAGGIASQLQGT-----------SSNYLVEGLLNY 525

Query: 640  NHQFSGHKLNFLLGATYNKSQGETSGITGSGQSSD-SQVKNLS-ASSSFNQTGSSFYEYR 697
                     + ++G T  K         G G  SD ++  NL   + S N   SS  +  
Sbjct: 526  TKDIGQDSFSAVVGVTTQKFIVSRFSAEGRGFPSDATETYNLGLGNPSLNVVSSSKVDNT 585

Query: 698  YNAGFFRLDYNFKERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPW 757
              +   R +Y+ + +YLL  S R DGS+RFG +N+F  F S A GW V++E   K   P 
Sbjct: 586  LLSYLARANYSLRNKYLLTASIRADGSSRFGQNNKFGYFPSFAFGWKVNQEEFFKPLEPL 645

Query: 758  LNFFKLRANYGLTGSDGVGDYTFMDLY-SANTFYLPYQNVVGFAPGRLLNSKLQWEEKRS 816
             +  K RA++G TG+  +G+Y  +  + +        Q      P R+ N  L+WE    
Sbjct: 646  FSTLKFRASWGRTGNQEIGNYRSISTFGNGPVVVYDDQQYTTTQPARIANPDLKWETTEQ 705

Query: 817  LNIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTI 876
            +N G D  L ++R+   +++    +S++L SL +P ++GF S   N    +QN+GWE+ +
Sbjct: 706  VNFGLDYGLWDDRLYGSLDWYVKNTSDMLLSLPIPRSSGFTSQLTNIGG-IQNSGWEFGL 764

Query: 877  GVKLLAAKAFKWNVNANLTVPTNKLLSLPSLDK-VNRVAGFGYHI-----GLPLGTTTMN 930
              + +  + F W  N  LT   NK+  L  +++ +   AG    I     GLPL +    
Sbjct: 765  TSRNITKQRFSWVTNIALTTVKNKVTDLGGINRIITGSAGATSQIAIIEEGLPLESFYGY 824

Query: 931  TYMGV-----------NPLTGLEV-LEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQ 978
              +G+           +P+   ++  +D+NG+ V  A     +  +  +L  S     + 
Sbjct: 825  EVLGIWQEGDDYGATEDPVQPGDIKYKDVNGDGVVNADDRVVLGNSFPDLIWS-----IG 879

Query: 979  SSFEYKGLSMNLSFD-------FNKQLKPRYFFVSSRPGRDAYNQPEIAYSLNRWENPGD 1031
            ++F++K L + +  +        N  L   YF    R  R+ Y +P     LNRW     
Sbjct: 880  NTFKHKSLELYVFLEGVQGAKMLNNGLIDTYFPAGVR--RNRYAEP----LLNRWTPENP 933

Query: 1032 IAVIQKYSTLLGSGLLTQTEAFYEDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQ 1091
                  +      G         EDA+YLRL+ + +S++LP +       +S +  I  Q
Sbjct: 934  TNEFPSFVRTSAQGEKRVNSKTVEDASYLRLSTVRLSYSLPFNGK---TFRSMQFYITGQ 990

Query: 1092 NLFTLSKYSGPDPITGPSG 1110
            NLFT++ YSG DP   P+G
Sbjct: 991  NLFTITDYSGMDPAINPNG 1009