Pairwise Alignments

Query, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score = 1025 bits (2650), Expect = 0.0
 Identities = 549/1058 (51%), Positives = 716/1058 (67%), Gaps = 25/1058 (2%)

Query: 1    MAYSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKNVK 60
            M+Y+ELQVT++FSFLRGAS A EL E A+A   + + + DRN+LAGIVRA  A R   ++
Sbjct: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLR 60

Query: 61   LIPACRLDMLDGPSLLAYPTDKDAYGRLSALLTLGNMRAEKGSCHISRADVYAHSKGIIF 120
            L+  CRLD+ DG S+L YPTD+ AY RL+ L+TLG  R  K +C +   DV A++ G+I 
Sbjct: 61   LVIGCRLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIG 120

Query: 121  CLV--MPGELNRRFEYEASFISAVAEYKQALNGQLYLAATRSYMGNDDKLIFRTSQLSDF 178
             LV  +P +L             + +  +    + Y++       ND   +   S L+  
Sbjct: 121  ILVPDLPDDLCG---------IQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEISNLATR 171

Query: 179  YGIPVVATGDIHYHNPSRRELQDVLTCVREKCTIQEAGFRLHQNAERYMKEVAEMERLFR 238
            + +  V T D+ +H P RR+LQD++TC+R + TI E GF   ++A+RY+K   EMERLF 
Sbjct: 172  FKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEEMERLFP 231

Query: 239  KYPSAIKNTMVIAEACNFSLDELKYVYPEEINQSGKSPMEELEFLTWKGAHEFYGEEIPE 298
            +Y  A+  TM I   C FSL+EL Y YPEE    GK     LE   W+   + Y E +P 
Sbjct: 232  RYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDRYPEGLPP 291

Query: 299  KVVKMIHHEMEFVRHMDYANYFLFVEDIVREARSRGILCQGRGSAANSAICFVLGITSVN 358
             V+K++ HE++ +R M YA YFL V  IVR ARS+GILCQGRGSAANSA+C++LGITS++
Sbjct: 292  DVLKVVRHELDLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYILGITSID 351

Query: 359  PMKFDLLFERFISPARNEPPDIDVDFEHERREEIIQYIYNKYGRDRAAIVATVTQQHQKG 418
            P   DLLFERF+S  R+EPPDIDVDFEHERREE+IQ+IY  Y R++AA+ ATVT+   +G
Sbjct: 352  PSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYRTYTREKAALCATVTRYRARG 411

Query: 419  AIRDVGKAMGLSVDTINRLSSSIWEFTDEWFEGKRVTEQGLNPNDPHLKKTLELTSQMMG 478
            AIRDVGKA+GL  D I  LSS +W +++E  + + V E  LNP+D  L  TL+L  Q+MG
Sbjct: 412  AIRDVGKALGLPEDVIKALSSGMWSWSEEVCD-RNVRELNLNPDDRRLVLTLKLAQQLMG 470

Query: 479  FPRQLGQHTGGFVVTQGKLTDLCPILNARMEDRTNIEWNKDDIDALGFLKVDVLALGMLT 538
             PR LGQH GGFV+T  +L DL PI  A M+DR  IEW+KDD++AL F+KVD+LALGMLT
Sbjct: 471  APRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLT 530

Query: 539  CIRKAFDLCRDYYGKHFTLANIPQDDPEVYDMICLADTLGVFQIESRAQMSMLPRLKPRE 598
            C+ KAFDL R++  +   L+ I Q+D   Y MI  ADTLG FQIESRAQM+MLPRLKPR 
Sbjct: 531  CMAKAFDLIREHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRT 590

Query: 599  FYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEPVVYPSPELEEILGRTLGVPLFQEQAMK 658
            FYDLV++VAIVRPGPIQGDMVHPYLRRR G+E V YP+PELE +LG+TLGVPLFQE AM+
Sbjct: 591  FYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMR 650

Query: 659  IAIVAAGFTPAEADGLRRSMATFKFKGLVNQYEQKLIEGMLAKGYTLEFAKRIFKQLEGF 718
            +A+V AGFT  EAD LR+SMATFKF G V+Q++ KL+ GM+  GY  EFA++ F QLEGF
Sbjct: 651  VAMVCAGFTGGEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGF 710

Query: 719  GSYGFPESHAASFALLVYVSCWLKHYYPDVFAAALLNSMPMGFYQPAQIVIDAQKHTVEV 778
            GSYGFPESHAASFAL+ Y S ++K +YP+ F AAL+NS PMGFY PAQIV DA+ H VEV
Sbjct: 711  GSYGFPESHAASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEV 770

Query: 779  REVDVNHSLWDNKLEE-KSGKYFAMRLGFRQISGIRADDVDTLVNGR-GEGYKSITAL-R 835
            R V +N S WD  LE   +    A+RLGFRQ+ G+   D   +V  R    + S+  + R
Sbjct: 771  RPVCINRSRWDCTLERIGNSDRHAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWR 830

Query: 836  DVGVSIAALERLADADAF-RSMGMDRRKALWEVSALQDMPVELFKGQASESVL------E 888
              GV   AL +LA ADAF  S+ ++RR ALW + AL+D P+ LF   A   +       E
Sbjct: 831  RSGVPSEALVQLAKADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQE 890

Query: 889  TQVELPLMGKGEHVVQDYATVGLSLKAHPGSFVRPQLDMLNIRSCHHINNDSTNGQLVKV 948
              V L  M  G +V++DY+  GL+L+ HP +F+R  L + NI +C    N S +G+ V  
Sbjct: 891  PGVALRQMTDGHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMN-SRDGRWVYT 949

Query: 949  AGLVLVRQRPGTAGGVCFITIEDETGYSNLVVFEKLFDTYRKEILHARLLMVEGRLQREG 1008
            AGLVLVRQ+PG+A GV FITIEDETG +NLVV+  LF+  R+ +L + ++ + GR+QREG
Sbjct: 950  AGLVLVRQKPGSAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREG 1009

Query: 1009 KVVHVIVSKCFDFTKMLGKLVQREVDELPVLTMARGDE 1046
            +VVH++  + FD +  L  L  R  DE   L   RGDE
Sbjct: 1010 EVVHLVAQQLFDLSGDLTGLADR--DEEFKLPAGRGDE 1045