Pairwise Alignments

Query, 445 a.a., signal recognition particle protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

 Score =  413 bits (1062), Expect = e-120
 Identities = 220/449 (48%), Positives = 307/449 (68%), Gaps = 8/449 (1%)

Query: 1   MFDNLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKAFTDDVRQKAL 60
           MF+NL D+L +  + + G+  +TE N+ +T++E+R ALL+ADV     K F + V+++A+
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAV 60

Query: 61  GQNVLTAVSPGQLLTKIMNDELAALMGGEVTELDTKA-NPTIILIAGLNGAGKTTFAGKL 119
           G  V  +++PGQ   KI+  EL +LMG    +L+  A  P ++L+AGL GAGKTT AGKL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGKL 120

Query: 120 ALHLKGKGKKPLLV-AGDMYRPAAVDQLEVLGTSVGVSVYANRASNDPVGIALEGIAHGK 178
           A  LK + KK ++V + D+YRPAA+ QLE+L   VGV+ + +  S  PV IA   I   K
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAK 180

Query: 179 QNGNNVIIIDTAGRLAIDESLMNEISEVKAKTQPHEILFVVDSMTGQDAVNTAKVFNDRL 238
               +V+I+DTAGRL IDE +M EI  + A   P E LFVVD+MTGQDA NTAK F D L
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAINPVETLFVVDAMTGQDAANTAKAFGDAL 240

Query: 239 DFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRILGMGDV 298
             TGV+LTK+DGD RGGAALS++++  KPIKFIG GEK +AL+ F+P+R+ASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASRILGMGDV 300

Query: 299 VSLVERAQMQFDEKEAAELQKKIRKNK-FDFNDFYNQIQQIKKMGNMKDLMGMIPGVG-- 355
           +SL+E+A+   D+ +A +L KK++K K FD  DF +Q+QQ+K MG +  LM  +P +G  
Sbjct: 301 LSLIEQAEATLDKDKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPNIGGV 360

Query: 356 ---KMMKNVDIQDDAFKSIEAIINSMTPFEKENPDAIQQSRRLRIAKGSGSKVEEVTKLI 412
              +M       +  FK +EAIINSMTP E+ +P+ I  SR+ RIA GSG++V+++ +LI
Sbjct: 361 NLAQMGNAQGAAEKQFKQMEAIINSMTPAERRDPELISGSRKRRIAMGSGTQVQDIGRLI 420

Query: 413 KQFEDMRKMMKQFSNPAAAAAMMKGMPKM 441
           KQ + M+KMMK+FS     A MM+GM  M
Sbjct: 421 KQHKQMQKMMKKFSAKGGMAKMMRGMGGM 449