Pairwise Alignments

Query, 445 a.a., signal recognition particle protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) from Escherichia coli BL21

 Score =  412 bits (1060), Expect = e-120
 Identities = 224/451 (49%), Positives = 304/451 (67%), Gaps = 9/451 (1%)

Query: 1   MFDNLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKAFTDDVRQKAL 60
           MFDNL D+L R  + + G+G +TE NV +T++E+R ALL+ADV     + F + V++KA+
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  GQNVLTAVSPGQLLTKIMNDELAALMGGEVTELDTKANP-TIILIAGLNGAGKTTFAGKL 119
           G  V  +++PGQ   KI+ +EL A MG E   L+  A P  ++L+AGL GAGKTT  GKL
Sbjct: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 120 ALHLKGKGKKPLLV-AGDMYRPAAVDQLEVLGTSVGVSVYANRASNDPVGIALEGIAHGK 178
              L+ K KK +LV + D+YRPAA+ QLE L   VGV  + +     PV I    +   K
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 179 QNGNNVIIIDTAGRLAIDESLMNEISEVKAKTQPHEILFVVDSMTGQDAVNTAKVFNDRL 238
               +V+++DTAGRL +DE++M+EI +V A   P E LFVVD+MTGQDA NTAK FN+ L
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 239 DFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRILGMGDV 298
             TGVVLTK+DGD RGGAALSI+ +  KPIKF+G GEK EAL+ F+PDR+ASRILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300

Query: 299 VSLVERAQMQFDEKEAAELQKKIRK-NKFDFNDFYNQIQQIKKMGNMKDLMGMIPGVGKM 357
           +SL+E  + + D  +A +L  K++K + FD NDF  Q++Q+K MG M  LMG +PG+G++
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360

Query: 358 MKNVDIQ--DDAFKSIEAIINSMTPFEKENPDAIQQSRRLRIAKGSGSKVEEVTKLIKQF 415
             NV  Q  D     +EAIINSMT  E+  P+ I+ SR+ RIA G G +V++V +L+KQF
Sbjct: 361 PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQF 420

Query: 416 EDMRKMMKQFSNPAAAAAM--MKGMPKMPFG 444
           +DM++MMK+      A  M  MKGM  MP G
Sbjct: 421 DDMQRMMKKMKKGGMAKMMRSMKGM--MPPG 449