Pairwise Alignments

Query, 199 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 181 a.a., RNA polymerase sigma-70 factor from Phocaeicola dorei CL03T12C01

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 2/175 (1%)

Query: 6   IEDERKLIEKIVGGDEQAFSVLFFKYLPVLQIFATKFTKSDDAAEEIIQDSFLRVWLNRD 65
           + D R +I+ +  GD++ FS+++  Y   L +F + +   ++A EEI+QD  + VW  R+
Sbjct: 3   LNDNRLIIKTLRSGDQKVFSLVYASYYKPLCLFCSSYVSLEEA-EEIVQDLMMYVWEKRE 61

Query: 66  KLAEVDNVKAYLYKYVSNECLSYLRKKLKEDRVVDAFTAKQQNSHNSTVETINLNEVTKI 125
            L E  ++K++L+  V N  L+ + +     +V + + ++Q  S    +++    E+   
Sbjct: 62  SLVEDLSLKSFLFTSVRNRALNSITRSHITRQVYEEYQSQQLKS-LPALDSCYSTELFNA 120

Query: 126 IAIAVEKLPDQRKNIYQLSRRDGKTIPEIAEILNISPNTVKNALVTALKSIRIQL 180
              A+  LP +++ +Y +SR    T  EIA+ L +S  TV   +  AL+  RI+L
Sbjct: 121 YMEALHALPKEQQKVYVMSRYKQLTHKEIADTLEVSVQTVNYRIGKALQFFRIRL 175