Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1100 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  412 bits (1059), Expect = e-119
 Identities = 336/1169 (28%), Positives = 534/1169 (45%), Gaps = 143/1169 (12%)

Query: 3    KIYLTSLSILLLCMATISAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYT 62
            K+ LT++  LLL     SA+AQ TV+GT+TD+ G P+ G S+ +  T  GT T  +G Y 
Sbjct: 4    KLLLTTMLCLLL---GFSAWAQSTVTGTITDDNGDPIPGASIRVVDTNLGTVTDLDGVYN 60

Query: 63   LSVPSN-STIVFKYLGYLNKEVSVGDNNTINVTLLDDAKALGEVVVTG-LGEERNTRNLG 120
            ++VP+  +T+ F ++G+  +++ VG  +TI+VTL      L EVVVTG +G E++ R LG
Sbjct: 61   INVPAGKTTLTFSFVGFETQQIEVGGRSTIDVTLSPSVSDLQEVVVTGAMGIEKDPRKLG 120

Query: 121  YAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTP 180
            YA++ +    I  ++  N  +AL    PG+ +    GG  S+   QIRG SS+   +  P
Sbjct: 121  YAVSTVDSKDILQSSPTNVASALYAKAPGVTISTNPGGATSAVAVQIRGLSSI-SYQQQP 179

Query: 181  LIVVDGVIL--SDDAMSPARAGDQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAING 238
            L+VVDGVI    D       +  +  GN +  IN ++IESI++LKG + +ALYGS A  G
Sbjct: 180  LLVVDGVISRNGDTNNDGYWSSPRIKGNGILDINPENIESINILKGAAASALYGSDAAAG 239

Query: 239  VLLITTKKGFAQKGLGISFSHDETFDNAYALPDMQQEYGSGF---TPRDFIKGANGM--N 293
            V++ITTK G    G G+ F+     +    LPD+Q  +G G+   T        NG    
Sbjct: 240  VIVITTKDGGKSNGFGVDFNVSYGVEKVGVLPDVQNVFGPGYDRATNMSMGADENGWVER 299

Query: 294  QINSA--------SYGFSFGPKLDGSTILDIDGRQISN-SILNNPLSLYETGRYVNSNIS 344
            Q+N          S+G  FGPK+DG  +   DG      +  +N  + Y TG     N++
Sbjct: 300  QVNGQTVQSPLFNSWG-QFGPKMDGRDVYFWDGETRPYVAYEDNMKNFYRTGHSGIYNVA 358

Query: 345  MQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQRLGDAVVIDATASY------- 397
            +  G+E + +R SY  N  +G+    + N++TFN     ++   V +D  A+Y       
Sbjct: 359  ISNGSENSNYRLSYTRNDYRGVMEGGEQNKNTFNLNSKYQVAPKVNVDLVATYISEKVTN 418

Query: 398  ---------SNVRGF-NPQRISGDNSLIYGLTWGY---PTNFDLDYWKDNYIDPVNGGRS 444
                     +N  GF NP          Y  + GY   P N +L Y  D     V  G  
Sbjct: 419  RPWMVDRMSNNYSGFLNPATDIRWFEEKYQTSKGYKYIPANGNL-YDPDEAFALVTAGTP 477

Query: 445  TVDPFTTNQLFFRLNKFSQIQNENNFRGTINAKTNFTKWLQLETSASLNWYNTNKEDREL 504
             +D + T     R  +F++  N N   G +    +    L +      ++     E++E 
Sbjct: 478  YMDYYWTQ----RARQFTE--NTNRLMGAMTVTYDILDNLTVRGRVGTDYTGYATENKEP 531

Query: 505  GQDPGF--KGGYYGSG-------IRNVIDSRYRAGLNLNHKVNDFDLFLQLGSEVVRSQS 555
               P      G YG+          +V+ S Y A L      N +DL L+ G +      
Sbjct: 532  NTVPLSVDNSGLYGTSQDQYRIFYGDVLVS-YNASLG-----NGYDLNLRAGYQAREENY 585

Query: 556  KGANYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVFASYAQGSIGYKNWLTLNLYAR 615
            +  +  T GGL     + ++ S   P  G  T +       +A  S+  K++L +    R
Sbjct: 586  RYTSQNTQGGLTEENWFSMNASRQNPR-GYSTRSYLVKDGLFAMASLDVKDFLFIETSLR 644

Query: 616  KEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLRASYVVTGGGTVVYRS 675
            +E  STL + N      + YP    A+  +    +P   +Y K+R+SY V G     Y++
Sbjct: 645  QERTSTLYFDNN----KFVYPSVSAAFELSKVATLPEFITYSKIRSSYGVVGNPAPAYQA 700

Query: 676  NTGYYLKGSNYQAVNSNTA--NIEQYGFDSQTLGNPDLKPLRAFSKEIGIELKMFKNRLG 733
            N  Y     N  +++   A   + QYG       N  L+       EIG E +   NR G
Sbjct: 701  NVVY-----NAASIDGRPALYPLAQYG-------NNGLQNELKHEAEIGWENRFANNRFG 748

Query: 734  LDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSFSWDAFF 793
            L+ T Y+   K+ I+ L +P+ +G    L N G++Q+ G+E  LS TP++T  + WD   
Sbjct: 749  LNLTYYQNTIKDMILPLQIPTSTGANTILSNVGNMQNYGLEVGLSATPVQTADWVWDVQI 808

Query: 794  NYTRNRNKIISLAPGVTTVQLEGGD--GIRTIAKVGGEYSTLVAAYGYAKYQARDANGNP 851
            N   NRNK+  L PG+ T+     D   ++ ++++G                A D  G  
Sbjct: 809  NTGFNRNKVTQLMPGLETLIHSRPDNGSLQIVSQIG--------------EPAGDIMGYT 854

Query: 852  IDNPNNGKRVISPAGTGGAFYTRASNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSLS 911
            +    +G+ ++   G           Y    ++   +G+  PK  G   N   YK+ +L+
Sbjct: 855  LMRNESGELLVGEDG----------YYIPDYDNLVKLGNVQPKAAGGFINNLGYKNFNLN 904

Query: 912  ALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAY--------TEAGNQEIGVV 963
            A+ID K+GG V+S +  Y    G L+ TLFGR+ E GG  Y          A     G  
Sbjct: 905  AVIDYKWGGQVYSPSIQYMRSAGMLEETLFGRSEEYGGLPYYVNGDGDFVSAEGMSAGPN 964

Query: 964  LDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNGWGN-------GIRERG 1016
             + ++ DG I++GVN  G  +   +D           YY N+  WG+       G  E  
Sbjct: 965  GESIYHDGMIMDGVNGEGEQNTTIVDAP--------NYYLNTYYWGSYPGSGLVGTYESA 1016

Query: 1017 AFKSSWVAVRDITLSYDLPKAFVSKIKMNGVKVYASARNIGFLYNNAPD-----NLNVND 1071
             F ++++ +R++ +SY +PKA   K K+  + + A  RN+ ++Y + P       +  N 
Sbjct: 1017 VFDNNYIKLRELVVSYTIPKAVGKKFKVQNMTISAYGRNLFYIYKSLPHLDPEAAVGTNY 1076

Query: 1072 FTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
             T  G     +G G    R++G+ I  SF
Sbjct: 1077 LTRGG-----IGNGGAASRSYGMSIRASF 1100