Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1047 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  286 bits (731), Expect = 7e-81
 Identities = 298/1115 (26%), Positives = 467/1115 (41%), Gaps = 172/1115 (15%)

Query: 1    MKKIYLTSLSILLLCMATISAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGK 60
            MK+ + T L IL L      A  Q  V+G VTD  GL L GV+V +KGTTKGT    EG 
Sbjct: 1    MKQAF-TFLGILFLL--PFLALGQDQVTGQVTDASGLGLPGVTVMIKGTTKGTVADFEGN 57

Query: 61   YTLSVPSNSTIVFKYLGYLNKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLG 120
            Y++   +++T+ F ++G+  +E+ V   + INVTL +D K+L EVVVT +G ++  + LG
Sbjct: 58   YSIEAAADATLQFSFIGFTTQEIPVNGQSQINVTLTEDEKSLDEVVVTAIGIKQQKKKLG 117

Query: 121  YAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTP 180
            YA   +  + +  ANT+N   AL G V G+ V   TG  Q SP F +RG         TP
Sbjct: 118  YATQEVNTEGLEQANTMNVGNALSGQVAGLTVTNPTGMFQ-SPSFSLRG--------KTP 168

Query: 181  LIVVDGVILSDDAMSPARAGDQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVL 240
            LIV+DGV +  D                  I+ DDIESI+VLKGG+ +ALYG+R  NG +
Sbjct: 169  LIVLDGVPVETD---------------FYDISPDDIESINVLKGGAASALYGARGKNGAI 213

Query: 241  LITTKKGFAQKGLGISFSHDETFDNAYAL-PDMQQEYGSGFTPR-DFIKGANGMNQINSA 298
            LI T+K  +++GL ++ S        + + P+ Q +YG+G   + +F  GA+G       
Sbjct: 214  LI-TRKNASKEGLTVTASTSNMVTAGFTVFPETQTQYGNGSNGKYEFWDGADGGISDGDM 272

Query: 299  SYGFSFGP-------------KLDG----------STILDIDGRQ-------ISNSILNN 328
             +G  F P             K  G           TI D   R        + +  LN+
Sbjct: 273  IWGPKFEPGVMVPQWNSPIRDKQTGETIEWYGNVAGTIYDDKSRYERVPTPWVRHDNLND 332

Query: 329  PLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQRLGDA 388
             L    TG    ++ S+    E+  F FS   +  KG  P   L      F  + +L D 
Sbjct: 333  FL---RTGVVTKNDFSVAYQGERAQFYFSGNYSNQKGQVPNTSLTTGGLTFNSSFKLLDN 389

Query: 389  VVIDATASYSNVRGFN-PQRISGDNSLIYGLTWGYPTNFDLDYWKDN-YIDPVNGGRSTV 446
            + +DATASY+ V   N P+   G  + +Y +      + +    KD+ Y+  + G R   
Sbjct: 390  LQLDATASYNKVYSPNYPRYGYGPKNHMYTILIWMGDDVNGQDLKDHMYVPGLEGYRQAN 449

Query: 447  DPFT-TNQLFFRLNKFSQIQNENNFRGTINAKTNFTKWLQLETSAS-------------- 491
              +   N ++F   + +Q+ N+N   G +  K   T  L ++   S              
Sbjct: 450  YNYAWYNNVYFASYELNQLFNQNTLDGKLKLKYQITPDLYIQGRISARQRADFSDMQSPK 509

Query: 492  --LNWYNTNK------EDRELGQDPGFKGGYYGSGIRNVIDSRYRAGLNLNHKVNDFDLF 543
              +N+ ++         D +L  D  F   YY       I   +  G+N           
Sbjct: 510  SYMNYGDSRNGDYKMWNDNQLNLDTDFLASYY-----KTITDNFSFGVN----------- 553

Query: 544  LQLGSEVVRSQSKGANYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVFASYAQGSIG 603
               G+   R ++    Y +S GL VP  Y LSN+   P     T     + + Y   ++ 
Sbjct: 554  --AGASSFR-RTYQQEYASSDGLIVPGVYSLSNT-QGPVQASNTFQEKAIRSVYGTVNLE 609

Query: 604  YKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLRASY 663
              N + LNL  R +W+STL     T   +YFYP A L+ + ++ + +P    Y K+  S+
Sbjct: 610  MWNSVFLNLTGRNDWSSTL----PTTTNSYFYPSASLSAMVSEFITLPKAMDYLKVYTSW 665

Query: 664  VVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDLKPLRAFSKEIGI 723
                     Y S    Y KG  Y +  S         +    L NP +KP ++ + E G+
Sbjct: 666  SEVSSDLNPY-SLQATYNKGVTYGSTPS--------VYYPSGLVNPSIKPEKSTTFEAGL 716

Query: 724  ELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIK 783
                 + RL L+ T YR   +NQII+LS+   SG  +R +N  +    G+E +L+   I 
Sbjct: 717  STSFAQKRLTLEGTYYRILDENQIIDLSISEASGFNSRKVNGNEYTTDGVEIMLNYLAID 776

Query: 784  TQSFSWDAFFNYTRNRNKIISLAPGVTTV-QLEGGDGIRTIAKVGGEYSTLVAAYGYAKY 842
               F W+   N+TR   ++  +  G      L  GD   +                YA  
Sbjct: 777  HDKFDWNVGLNWTRFVKRLSDIYGGEDRYGNLREGDRSDSY---------------YATV 821

Query: 843  QARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLESESTIGSTLPKFYGSIRNV 902
              + A+G  I + N G     P  T                    IG   P +   I+N 
Sbjct: 822  WQKSADGQVILDANTGLPTKDPYPT-------------------KIGHLDPSWRLGIQNR 862

Query: 903  FTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQEIGV 962
            F      ++  +D  +GG + S T       G   N++  R  E        A  + + V
Sbjct: 863  FRIGDFRVAMDVDGAWGGLIRSLTIEKMWWGGKHPNSVLYRDQE-------YAAGEPVYV 915

Query: 963  VLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNGWGNGIRER------G 1016
                V   G +   V+   +S  +   +      ++W+ ++    +   + E        
Sbjct: 916  PEGVVVTGGELTRDVDGNIISDTREYTQ--NTTAVSWQTWSQIYPYQAQVTEEESETFAN 973

Query: 1017 AFKSSWVAVRDITLSYDLPKAFVS-KIKMNGVKVY 1050
             F  S+  +R + ++YDL     S KIK   + +Y
Sbjct: 974  VFDRSYFKLRRLAVTYDLMNIMQSEKIKQLDLSLY 1008