Pairwise Alignments

Query, 633 a.a., ATP-dependent RNA helicase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  335 bits (859), Expect = 3e-96
 Identities = 197/550 (35%), Positives = 311/550 (56%), Gaps = 14/550 (2%)

Query: 2   TNPFQLLGISDDVVNAVKDLGFETPTPIQEQSIPVLLEGTNDFVGLAQTGTGKTAAFGLP 61
           T  F    ++ +++ AV   G+E P+ IQ+QSIP+++ G  D +G AQTGTGKTAAF LP
Sbjct: 5   TGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAG-KDMIGQAQTGTGKTAAFALP 63

Query: 62  LLELIDFKVNKPQALILCPTRELCLQIANDLKNFSKNVANAHVVAVYGGANIMQQLREIR 121
           +L  ID    +PQALIL PTREL LQ+A   + ++K +    VVAVYGGA +  QL+ IR
Sbjct: 64  ILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123

Query: 122 QGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQDDINDILSTTPDDKKT 181
            G QIVVATPGR+ D + R     + V ++VLDEADEML +GF DD+  I    P  ++T
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQT 183

Query: 182 WLFSATMPAEVRRIAKNYMDNPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFN 241
            LFSAT+P  +R IA+ ++ +P  + + TK      IE  + +V A  K +A+  +++  
Sbjct: 184 VLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVE 243

Query: 242 PEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIATD 301
                ++F +TK  T D+A  L   GY A AL+GD++Q QR++V+   ++  + +++ATD
Sbjct: 244 DFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATD 303

Query: 302 VAARGIDVNNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIINSKELGKIRQLERI 361
           VAARG+DV  +THV N  +P + ESY HR GRTGRAG+ G ++ ++  +E   ++ +ER+
Sbjct: 304 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERV 363

Query: 362 IGKQFTKAELPTGFDVCEKQLFSLVHKVHNVEVNNEQI-DQYIPRIMDEFADLSK--EDV 418
            G++  +  LP    V + ++  L + +  +  + E      + R+  +     +     
Sbjct: 364 TGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRALAAA 423

Query: 419 IKRFASLEFNRFLDYYSKAPDL---NAAVGD--DRGADRGERGGRGRG-----SEGYTRL 468
           + R A+      L    K   L   +A  GD  +R  DR +RG R R      +EG  R 
Sbjct: 424 LLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGRARC 483

Query: 469 FINLGSVDEFTRGDMLSFICNNGKIGGKSVGKIDLKGVFSFFEVEDDVADKVFEGFKSVE 528
              LG+ D     ++L  I N G +  +++G+I ++  FS  E+ +D  +K+    K   
Sbjct: 484 RTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLKDTR 543

Query: 529 FNGRQVRIEK 538
             G+Q+++ +
Sbjct: 544 VAGKQLKLRR 553