Pairwise Alignments

Query, 633 a.a., ATP-dependent RNA helicase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  345 bits (884), Expect = 4e-99
 Identities = 201/552 (36%), Positives = 311/552 (56%), Gaps = 16/552 (2%)

Query: 2   TNPFQLLGISDDVVNAVKDLGFETPTPIQEQSIPVLLEGTNDFVGLAQTGTGKTAAFGLP 61
           T  F  L ++ ++V AV   G+E P+ IQ+QSIP++L G +D +G AQTGTGKTAAF LP
Sbjct: 5   TGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAG-HDMIGQAQTGTGKTAAFALP 63

Query: 62  LLELIDFKVNKPQALILCPTRELCLQIANDLKNFSKNVANAHVVAVYGGANIMQQLREIR 121
           +L  ID    +PQALIL PTREL LQ+A   + ++K +   +VVAVYGGA +  QLR IR
Sbjct: 64  ILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIR 123

Query: 122 QGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQDDINDILSTTPDDKKT 181
            G QIVVATPGR+ D + R     + V+Y+VLDEADEML +GF DD+  I    P  ++T
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQT 183

Query: 182 WLFSATMPAEVRRIAKNYMDNPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFN 241
            LFSAT+P+ +R IA+ ++  P  + + TK      IE  + +V A  K  A+ R+++  
Sbjct: 184 VLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVE 243

Query: 242 PEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIATD 301
                + F +TK  T D+A  L   GY A AL+GD++Q QR++V+   ++  + +++ATD
Sbjct: 244 EFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATD 303

Query: 302 VAARGIDVNNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIINSKELGKIRQLERI 361
           VAARG+DV  +THV N  +P + ESY HR GRTGRAG+ G ++ ++  +E   ++ +ER+
Sbjct: 304 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERV 363

Query: 362 IGKQFTKAELPTGFDVCE----KQLFSLVHKVHNVEVNNEQIDQYIPRIMDEFADLSKED 417
            G++  +A LP    V +    K   SL   V   E  + ++   +   +   A      
Sbjct: 364 TGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARALASA 423

Query: 418 VIKRFASLEFNRFLDYYSKAPDLNAAVGDDRGADRGERGGR-GRG----------SEGYT 466
           ++++  + +         + P + +        +RGERG R  RG          +EG  
Sbjct: 424 LLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRV 483

Query: 467 RLFINLGSVDEFTRGDMLSFICNNGKIGGKSVGKIDLKGVFSFFEVEDDVADKVFEGFKS 526
           R    LG+ D     ++L  I N G +   ++G+I ++  FS  E+ +D  +K+    K 
Sbjct: 484 RCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKD 543

Query: 527 VEFNGRQVRIEK 538
               G+Q+++ +
Sbjct: 544 TRVAGKQLKLRR 555